Candidatus Planktophila sulfonica: A1sIA56_03270
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Entry
A1sIA56_03270 CDS
T05158
Name
(GenBank) ATP-dependent RNA helicase HelY
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
psuf
Candidatus Planktophila sulfonica
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuf03019
]
A1sIA56_03270
Enzymes [BR:
psuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A1sIA56_03270
Messenger RNA biogenesis [BR:
psuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A1sIA56_03270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
IstB_IS21
nSTAND_NTPase5
ScmC
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ASY15933
UniProt:
A0A249KGJ5
LinkDB
All DBs
Position
complement(660209..662584)
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AA seq
791 aa
AA seq
DB search
MTTPAERYAAAKQRGKHPLTIAFIEQFDFGFDEFQIKACQAVEDGKGVLVAAPTGAGKTV
VGEFAAFSALAQGKKCFYTTPIKALSNQKFQEFVERFGEDRVGLLTGDTNINSEADVLVM
TTEVLRNMLYANSTTLKNLGSVVMDEVHYLADKSRGAVWEEVLIHLMESVQVISLSATVS
NAEEFGDWLGEVRGSTEVIVSEIRPIPLYQHVLIGDRLVDLFREQGRINPEILGLEREAL
RQVRTPRHRRERFGDGDSRLTRPDIIEKLQRENLLPAITFIFSRAGCDAAVKQCLAAGIK
LTNTEERLEIAETAARYTQNLAEEDLEVLGYRDWLIALERGIAAHHAGLLPSFKGAVEDL
FKRGLVKAVFATETLALGINMPARTVVLEKLTKWNGEAHVSITPGEYTQLTGRAGRRGID
IEGNAVVQWSPTVDSATAAGLASTRTYPLRSSFTPTYNMSINLIARFGRERAHGSLESSF
AQFQADRAVVGLVRQIKKNNSAAAELTDSAQCHLGDFSEYSRIRIDIKELERLLSKRDGR
RSIDQRQRVKLENELDGMRRSLRQHSCHSCNDRETHARFAEKADRLNRESEGLRARVENR
THVIAKTFDRICDVLTHLGYIEGEKPLEQGKILAKIFAESDLLLTESIRRGVFDSLTPPE
LLSVASAMIYQGRSSEPYAPKMPNDNVANALVAVSKIWIELEAIENEFDVKTQREPDFGF
CYASFRWANGHSLSSILKGTDMTVGDFVRSIKQLIDLLTQIGGAAEELRPACREGIKRLD
RGVISYMLGDL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcctgcagaacgctacgccgctgcgaagcaacgtggaaagcatccgctcacc
attgcatttatcgagcagtttgatttcggtttcgacgagtttcaaatcaaagcttgccaa
gctgttgaagatggcaaaggcgttctcgtcgcagcacctaccggagctggcaagaccgta
gtcggagagttcgcagcatttagcgcactcgcacaaggtaagaaatgtttctatacaaca
ccaattaaggctctctcaaaccagaaattccaggagtttgtagagcgcttcggcgaggat
cgcgtaggtcttcttacaggcgataccaacatcaattccgaagcagatgtcttggtgatg
actaccgaagtacttcgcaacatgttgtacgcaaattcaacaacgttgaagaatcttggc
tctgttgttatggatgaagtccactacttggcagataagtcacgtggcgcagtatgggaa
gaagttctcatccacttaatggaaagtgttcaggtaatttcactctctgcaaccgtttcc
aacgctgaagaatttggtgactggctcggcgaagttcgggggtcaaccgaagtcatcgtc
tctgagattcgaccaattcctctgtaccagcatgttcttatcggagatcgcctcgtagat
ctattccgcgagcaagggcgtatcaaccccgaaatcttgggactcgagcgtgaagcgcta
cgacaagtacgaactccacgccatcgacgtgagcgcttcggtgatggcgacagcagattg
acacgaccggacatcattgaaaagttacagcgcgaaaacttacttccggcaattaccttt
atcttttctcgcgccggttgtgatgccgcagtgaaacaatgtttggctgctggaatcaag
ttaaccaatacggaagagcgcctagagatcgctgagactgcggcaaggtatacgcagaac
cttgcagaagaggatcttgaagtacttgggtatcgcgattggttgattgcacttgagcgc
ggaattgcagcccaccatgccggtttactgccgagctttaagggtgcggttgaagatctc
ttcaagagaggtttagttaaggctgtttttgctacagaaacgcttgcactaggaatcaat
atgccggcgcggactgtcgtgcttgaaaaactcaccaagtggaacggtgaagctcacgtt
tcgatcacgccaggggagtacacccagctaacagggcgagctggtcgtcgcggtatcgat
atcgagggtaatgctgttgtgcagtggtctccaactgttgattcagcgactgcggcagga
cttgcttcaactcgtacttatcctcttcgttcatcgttcactccgacatacaacatgtct
atcaatctgattgcccggttcggtcgagagcgtgcccacggaagtctcgagtcttccttt
gctcagttccaagcggaccgcgctgttgtcggtttagttcgtcaaattaagaagaataat
tctgctgcggcagagctcaccgattctgcgcaatgtcacttgggtgacttttcagagtat
tcgcggatacgaatcgatatcaaggagctagagcgtctattgagtaagcgtgatggtcga
cgcagtatcgaccaacgccagcgtgtgaaattagagaacgaacttgatggaatgcgtcgt
tcactgcgccaacattcatgtcactcttgcaatgatcgtgaaacccacgctcgttttgcg
gagaaggctgatcgtttaaatcgtgaatctgagggtttacgtgcacgagttgaaaaccgt
acccacgtaatcgccaagaccttcgatcgtatctgcgatgtattgacccaccttggttat
atcgaaggggagaagccgctagaacagggcaagattctggcgaaaatatttgctgaatct
gatttattgcttaccgaatctattcgacgcggagtatttgactctcttacaccgcccgag
ttgttatcggttgcatcagcgatgatttatcagggcagaagctctgaaccgtatgcgcca
aaaatgccgaacgacaatgttgcaaacgctcttgttgcagtgtcgaagatctggatcgaa
cttgaagcaattgaaaatgagttcgatgtaaagacacaacgtgaacctgattttggtttc
tgttacgcatcattccggtgggctaatggacactctctcagtagcattctcaagggaact
gatatgacagttggtgactttgtgcgaagcattaaacaacttatcgacttgcttactcaa
attggcggagcggcagaagaacttcgacctgcctgccgtgaaggaattaagcgcttggat
agaggcgtcatttcatatatgttgggcgatctatga
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