Candidatus Planktophila sulfonica: A1sIA56_04360
Help
Entry
A1sIA56_04360 CDS
T05158
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
psuf
Candidatus Planktophila sulfonica
Pathway
psuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A1sIA56_04360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuf03019
]
A1sIA56_04360
Messenger RNA biogenesis [BR:
psuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A1sIA56_04360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
ASY16132
UniProt:
A0A249KH58
LinkDB
All DBs
Position
complement(871451..873136)
Genome browser
AA seq
561 aa
AA seq
DB search
MTQHPHPNLGTPSKLVDGGLRIVALGGISEIGRNMTVYETNGKLLIVDCGVLFPEDNQPG
IDLILPDFSYIRDRLNDVVGLFLTHGHEDHIGAVPYLLRERGDIPVYGSPLTIALISAKC
KEHRISPLTREVTEGNREDVGPFELEFVAVNHSIPDALAVAIHTKAGTVLHTGDFKMDQL
PLDGRITDLRTFARLGEEGVDLFLVDSTNADVPGFTPSEREIMPALNRVIASTKRRVIVA
SFSSHVHRVQQVIDTAALHNRRVAFIGRSMIRNMKIAEDMGYLNVPSGILFDARELDNYD
DRVVLICTGSQGEPMAALSRMANGDHQIRVGDGDTVILASSLIPGNENSVFRVINELTRF
GAKVVHKANAMVHVSGHAAAGELLYCYNIVKPKYVLPVHGEWRHLKANAEIAIQSGVPRE
NAFIIENGIVVDLVNHEAEVVGAVPCGFVYVDGQSIGDITESSLKDRRILGEEGFISVIV
VIESQTGKIVAGPDIHARGFNEDEALFDEVRGQIEKALTAAVAEGVNGTHQLSQVVRRTI
GGWVGQKHRRRPMIVPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacatccccatccaaatctcggtacgcctagcaagctagttgatggcggcttg
cgcatagttgcactcggtggaatctctgaaatcggtcgcaatatgacggtctatgagacc
aacgggaaattactgattgtggactgcggagttctcttccctgaagataatcaaccagga
atcgatctgattcttcccgactttagttatatccgcgatcgcctcaacgatgttgtcggt
ctcttccttacccacggccacgaagaccatatcggtgcagttccttatctcttgcgcgaa
cgcggagatattcctgtctatggatcgccactaaccatcgctctaatttcagcaaaatgt
aaagaacatcgcatctcacctttaactcgtgaagtcaccgaaggcaatcgcgaagatgtc
ggcccattcgaactcgaatttgttgcagtcaaccactcaatcccagatgcgcttgccgtt
gcaatccacactaaggctggaactgttctacacacaggcgatttcaagatggatcaactt
ccacttgatggccgcattacagatttgcgcaccttcgctcgtttgggcgaagaaggagtt
gacctcttcctcgttgattcaaccaatgccgatgttccgggctttactccttcagagcgc
gaaatcatgcctgcgctcaatcgcgttattgcatccactaaacgacgtgtcatcgtcgca
tcgttctcatcacatgttcaccgcgtgcaacaagtaatcgataccgcagcacttcacaat
cgtcgcgtagcttttattggccgctccatgattcgcaatatgaagatcgctgaagatatg
ggttacctcaacgttccaagcggaattctcttcgatgcgcgcgaactcgataactacgat
gatcgtgttgtacttatctgtacaggctcgcaaggcgaaccaatggccgccttgtcacgt
atggcaaatggagaccaccagattcgcgtgggcgatggcgacactgtcatattggcttca
tcacttatcccaggtaatgaaaattctgttttccgagtcatcaacgaactcacacggttt
ggtgcaaaagttgtacataaagctaacgccatggtgcacgtatctggtcacgctgctgcc
ggcgaacttctctattgctacaacatcgtgaagccgaagtatgtcttacctgttcatggc
gaatggcgccatctcaaagcaaatgctgagattgcaattcagtccggtgtgccacgtgaa
aacgctttcattattgaaaacggaatcgttgtagatctcgttaaccacgaggcagaagtt
gtgggcgccgttccttgcgggttcgtttatgtcgatggccaaagcattggagatatcact
gaatcctcattgaaggatcgtcgaatccttggcgaagaaggatttatctctgtcattgtc
gtcattgaatcccaaacaggaaagattgttgcgggaccagatattcatgcacgtggattt
aatgaggatgaagcgctctttgatgaagtgcgtggacagattgagaaagctctcacagca
gctgttgcagagggagttaacggaacacatcaactttcacaagtagtgcgcagaactatc
gggggatgggtcggccagaaacaccgccgacgtccgatgatcgttcccgttgtcgtcgag
gtttag
DBGET
integrated database retrieval system
