Candidatus Planktophila sulfonica: A1sIA56_05455
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Entry
A1sIA56_05455 CDS
T05158
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psuf
Candidatus Planktophila sulfonica
Pathway
psuf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1sIA56_05455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuf03021
]
A1sIA56_05455
03400 DNA repair and recombination proteins [BR:
psuf03400
]
A1sIA56_05455
Enzymes [BR:
psuf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1sIA56_05455
Transcription machinery [BR:
psuf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1sIA56_05455
DNA repair and recombination proteins [BR:
psuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1sIA56_05455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
ASY16334
UniProt:
A0A249KHR9
LinkDB
All DBs
Position
complement(1084212..1085222)
Genome browser
AA seq
336 aa
AA seq
DB search
MLIAQRPTLSEEVISENRSRFIIEPLEPGFGYTLGNSMRRTLLSSIPGAAVTSIRVAGAL
HEFTTLEGVKEDLTDIVLNIKNLVLSSDNDEPSVIYIRKSGAGAVTGADIAVPSGVEVHN
PELHIATLNGKANLEIELTVERGRGYVTAVQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDRLVVDVETKPSMKPRDAVASAGKTLVELFGLARELNLDAEGIEMGPSVMD
AALAADLALPIEDLDLTVRSYNCLKREGIHTVGELVNRSEADLLDIRNFGSKSIDEIKAK
LVSMGMSLKDSPAGFDPSQHQNYNVSDEDFADADQA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtgctaattgcacaacgcccaacgcttagcgaagaagtaatttccgagaaccgctcacgt
ttcatcattgaaccgcttgagccaggtttcggctacacactcggcaactcaatgcgccgt
accttgctttcatctattccaggtgcagcagttacaagcattcgcgttgccggagctctc
cacgagttcacaacacttgaaggtgtaaaggaagacctcacagatatcgtcttgaatatt
aagaaccttgttctttcaagcgataacgatgagccttcagttatctacatccgcaagtca
ggtgcaggcgctgttacaggtgctgacattgctgttccaagtggcgtagaagttcacaac
cctgaactccacatcgcaacacttaacggcaaggcaaacctcgaaatcgaacttactgtc
gagcgcggtcgtggctacgtcacagctgtacagaacaagcaagctggagcagagattggt
cgcattcctgttgactcaatctattcaccagttttgaaggttacatacaaggtagaagca
actcgcgttgaacagcgcacagacttcgatcgtcttgttgttgatgtcgaaacaaagcca
tcaatgaagccacgcgatgctgttgcatcagctggtaagacacttgttgaactcttcggt
cttgcacgcgaactcaatcttgatgctgaaggtatcgagatggggccatctgttatggat
gctgctcttgctgctgatcttgctcttccaatcgaagatctcgatctcacagttcgttca
tacaactgcttgaagcgcgaaggcattcacacagttggagagctcgtcaaccgttcagag
gctgacctactcgacatccgtaactttggatcaaagtcaatcgacgagatcaaggcgaag
cttgtatcaatgggaatgtctctcaaggacagcccagcaggtttcgatccatcacaacac
cagaactacaacgtgtcagatgaagacttcgctgacgcagatcaggcataa
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