Candidatus Planktophila sulfonica: A1sIA56_05635
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Entry
A1sIA56_05635 CDS
T05158
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psuf
Candidatus Planktophila sulfonica
Pathway
psuf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1sIA56_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuf03021
]
A1sIA56_05635
03400 DNA repair and recombination proteins [BR:
psuf03400
]
A1sIA56_05635
Enzymes [BR:
psuf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1sIA56_05635
Transcription machinery [BR:
psuf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1sIA56_05635
DNA repair and recombination proteins [BR:
psuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1sIA56_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ASY16369
UniProt:
A0A249KI57
LinkDB
All DBs
Position
complement(1105215..1109021)
Genome browser
AA seq
1268 aa
AA seq
DB search
MLDVNFFDELRIGLASAQNIRDWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDAEAREEDMPQLEKKLANDRKKIETKRDVDLDTRTKKLEAD
IAELESEDAKSDVKRKVRESAERELKAIRERSEREITRLEDVWSRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKRRLETFDLETEHAMLTDLSENGKGAKKTRAIKRLKVVN
AFMTTSNHPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITSPTQDMVLGLYYMTMEREGEIGEGR
AFGSVSEAIMAHDQHSVSLQAKVKIRVKGETLETTIGRALFNEALPADFPFVDHDVTKKA
LGAIVDKLAEFYPKVTVAQTLDALKSLGFHWATRAGVTIGIEDVVTPPRKREILDGYETQ
ADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKAMEDNFPHLNPVWMMVFSGARGNMM
QIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADSGY
LTRRLCDVAQDVIIREEDCGTDRGLALPIAIRQQAGNLVKHDHVETSVYGRTLAEDIEVN
GEVLAKAGSDLGDRVIDALVAAGVDEVKIRSVLTCDSKVGQCAACYGRSLAAGQLVAVGE
AVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAEAAGV
VSFREDAKGKKIIVTPDDGGEEVAYPITRRQKLLVEEGSRVEVGQKMVVGAIDPKQVLRI
LGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDTEMLPGELVERG
RFEAENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKSDP
LLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFDQGGSGEAVR
LDEVEIPR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgtcaacttctttgatgaactacgaatcggtcttgcatcggctcaaaatatt
cgtgattggtctttcggcgaagtaaagaagccagagacaatcaactaccgcacactcaag
cctgagaaggacggactcttcgacgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgttcgatttaagggaatcatttgcgaacgttgcggtgtt
gaagtaacacgcgcaaaggttcgtcgcgaacgcatgggtcacatcgagcttgcagctcct
gtaactcacatctggtacttcaagggtgttccatcacgccttggttaccttcttgacctt
gctccaaaggacctcgaaaaggttatctatttcgctgcttacatgatcacagaagttgat
gctgaagctcgcgaagaagatatgccacagctcgagaagaagcttgctaacgatcgtaag
aagatcgagacaaagcgcgatgtagatctagatacacgtacaaagaagctcgaggcagat
attgctgaactcgaatctgaagacgctaagtcagatgtaaagcgcaaggttcgtgaatct
gcagagcgcgagctcaaggcaatccgcgagcgttcagagcgtgaaatcacacgtcttgaa
gatgtctggtcacgctttaagaacctcaaggttcaagatctcgaaggcgatgagaacctc
taccgcgaaatgcgtgaccgttacggcatgtacttcaagggagatatgggtgctgctgca
atcaagcgtcgccttgaaactttcgatctcgaaactgaacatgcaatgctcaccgatctt
tctgaaaacggaaagggtgcaaagaagactcgtgctatcaagcgcctcaaggtcgtcaac
gcattcatgacaacaagcaaccacccagcatcaatggttctcgattgcgtaccggttatc
ccacctgatctgcgcccaatggttcagctcgatggtggacgctttgcgacttcagatctc
aacgatctctatcgccgcgttatcaaccgcaacaatcgtttgaagcgtcttgctgatctc
ggtgctccagaaattatcgttaacaacgaaaagcgtatgttgcaggaagctgtagatgcg
ttgttcgacaacggtcgtcgtggtcgtccagtaactggcccaggaaaccgtgcactgaag
tcactttcagacatgctcaagggtaagcagggacgtttccgtcagaacttgctcggaaag
cgcgtcgactactcaggtcgttcagtaatcgttgttggtccacagttgaagttgcaccag
tgcggtctgccaaagcagatggctctcgagctcttcaagccattcgtaatgaagcgtctt
gtagaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtatgggatgttcttgaagaagtaattgcagaacatccagtgctcctgaaccgc
gctcctacacttcaccgtttaggtatccaggcattcgaaccacaactggtcgaaggtaag
gcaatccagattcacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgttcaccttccattgtctgcagaagctcaggctgaagcacgcatcttgatgttg
tcttcaaacaacatcttgtcaccagctaacggtcgtccaatcacatcacctacacaggac
atggttcttggtctttactacatgactatggaacgtgaaggcgaaattggcgaaggtcgc
gcattcggatctgtatctgaagcgatcatggctcacgatcagcactcagtctcattgcag
gcgaaggtcaagattcgcgttaagggagaaactctcgagacaacaatcggccgcgcactc
ttcaatgaagctctaccagctgacttcccattcgttgatcacgatgtaactaagaaggct
ctcggcgcaatcgtcgacaagcttgctgagttctatccaaaggtcacagttgcacagact
ctcgatgcgcttaagtcgctcggattccactgggcaacacgtgccggcgtaacaatcgga
atcgaagatgttgtaacacctcctcgtaagcgtgaaatcctcgacggctatgaaacacaa
gctgacaaggttcaatcacagtacgaaaagggactcatcacagatgacgagcgtcgccag
gaactcattgagatctggacaaaggcaacagctgaagttggaaaggcgatggaagataac
ttcccacatctcaacccagtttggatgatggtcttctcaggtgctcgtggaaatatgatg
cagattcgtcagatcgcaggtatgcgcggacttgtagcgaacccaaagggtgaaattatt
cctcgcccaattaagtcgaacttccgtgaaggcttgtcagttctcgagtacttcatctct
acgcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactctggttac
ctcacacgccgtctctgcgacgttgcacaggacgtcatcattcgcgaagaagattgcgga
accgatcgtggtctcgcacttccaatcgctatccgtcagcaagctggcaaccttgtaaag
cacgatcacgttgaaacttctgtttatggtcgcacattggctgaagacatcgaagttaac
ggcgaagttcttgctaaggctggctcagatcttggtgaccgcgtcatcgatgcacttgtt
gcagctggtgtcgacgaagtaaagatccgctcagttcttacttgcgatagcaaggtcgga
cagtgcgcagcttgctacggtcgctcacttgctgcaggtcaactcgttgcagttggtgaa
gcagtcggaattatcgctgcacagtcaatcggtgaaccaggtacacagctcacaatgcgt
accttccacactggtggcgttgcaggtgatgacatcactcacggtcttccacgtatcgtc
gagctcttcgaagcacgtacacctaagggtgttgcgccaatcgcagaagctgcaggcgtc
gtttcattccgtgaagatgcaaagggtaagaagatcatcgttacacctgatgatggtggc
gaagaagttgcttacccaatcacacgacgtcagaagctacttgtagaagaaggttcacgc
gttgaagttggccagaagatggtcgtcggcgcaattgatccaaagcaggtacttcgtatt
ctcggaccacgtgcaactcaggttcacttggttaacgaaatccaatctgtttaccgctca
cagggcgtaggcattcacgataagcacatcgaagtaatcgttcgccagatgctcaagcgc
atcacagttcttgaagctggcgatactgaaatgcttccaggtgaactcgttgaacgcggt
cgctttgaagctgaaaaccgtcgcgttgttacaaccggtggcaaggctgcatctggtcgc
ccagaacttatgggtatcaccaaggcatctcttgcaactgaatcatggttgtcagcggct
tcattccaggaaacaactcgcgtacttacagacgccgcgctctctgagaagtcagatcca
ctcttgggtcttaaggagaacgtcatcatcggtaagttgatcccagctggtacaggcctt
gcccgttaccgcaacatccgagttgagccaacagaagaggcaaaggcagcggtttacgca
gcttatgacgagtacgacttcacaccattcgatcagggtggttcaggcgaagcagttcgc
ttggatgaagtcgagattcctcgctaa
DBGET
integrated database retrieval system
