Pseudarthrobacter sulfonivorans: AU252_03980
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Entry
AU252_03980 CDS
T04210
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psul
Pseudarthrobacter sulfonivorans
Pathway
psul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AU252_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psul03400
]
AU252_03980
Enzymes [BR:
psul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AU252_03980
DNA repair and recombination proteins [BR:
psul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AU252_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ALV40434
UniProt:
A0A0U2X8V4
LinkDB
All DBs
Position
complement(901294..904974)
Genome browser
AA seq
1226 aa
AA seq
DB search
MSPTGPSHPGPSNGGPSLTGLRRVLAEDQTFARVQAEAARGFDVRGQDYQISAPAGLRAV
LLAEMADGLDAGSDEGTPDGGLPPVVLAVTATGREAEDLTAALRAYLPADSVAEFPSWET
LPHERLSPRSDTVGRRLSVLRRLAHPESSTAGRLRVVVAPVRAVVQPIVAGLGDLVPVTL
KVGQDMPFSSVVRSLADAAYARVDMVTRRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVD
QMRWFAVADQRSLSAPGVHHPAELHAPPCREILITPSVMSRAATLKAQLPAAADMLEKIA
GGIAVEGMESLAPVLVDTMVPFVEQLPAGSISVIIEPEKVRRRAHDLAATNEEFLEAAWS
TASDGGTAPLDLSSQASAALHSASFRSLAETRSFSLEHEVSWWSITSLATDEELLPEIDV
LNLRAREPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHDADIPCARVD
TLEKEPQAGIIEVTTAAVGRGFVLDSLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAV
DPLQLVNGDSVVHEQHGIGRFIELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPT
DQLDQVTRYVGGDTPVLSKMGGSDWASTKSKARKAVKEIAGELIRLYSARMASKGHAFGP
DTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKA
VQDGKQVAILVPTTLLAQQHFETFTERFSGFPLRVKALSRFQGTKETKETVEGVKSGSVD
VVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEM
SLTGIRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQMFFVHNRVSTIDRT
AAKIRELVPEARVEVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIV
DGADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQL
AMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGDAEEKAAEMKIELPVNA
HLPHDYVPGERLRLEAYRKLASALTYEAIEEVLAELVDRYGEPPLPVQNLIAVARFRVGA
REAGLSDVALQGNFIKFSPAQLPESKLMRLTRMYPGSQSKPALDAVLIPKPKTARIGGRD
LQDAEILEWANGVIRNIFSDAPLAVS
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgagccccactggcccgtcccatcctggcccgtccaacggtggtccctcgctgaccgga
ctgcgccgtgtcctggcagaagatcagacgttcgcgcgggtccaggcggaggcggccagg
ggttttgacgtccggggccaggactaccagatcagcgcgccggccggactccgcgccgtc
ctgctggcggaaatggcagacggcctggacgctggctccgacgaaggaactcccgacggc
gggctccctcctgtggtgctggcggtcaccgcgacaggacgcgaagcagaggatctgaca
gcagccctgcgcgcttacctgccggccgattcagtggccgagttccccagttgggaaacc
ctgccgcacgaacggctctcgccccgctccgacacggtgggccgccggctgtccgtcctg
cgccgcctggcgcacccggaaagttcgacggcgggccggctgcgtgtggtggtggcaccg
gtccgcgcggtggtccagccgatcgtcgccgggctgggtgacctggttccggtcacactg
aaggtgggacaggacatgccgttctccagcgtggtgcggagccttgccgatgccgcctac
gcacgcgtggacatggtcacccgccgtggcgagtttgccgtccgcggcggcatcatcgac
gtcttcccgcccaccgaggaccatcccatccgcgtggagttcttcggcgacgaggtggac
cagatgcgctggttcgcggtggccgaccagcgctcgctgtcggcgcccggtgtgcatcac
cccgccgagctccacgccccgccctgccgcgaaatcctcatcacgccgtcggtgatgtcg
cgcgcagccaccctcaaggcgcagcttcccgcggccgcggacatgctggagaagatcgcc
ggcggcatcgccgtggaagggatggaatccctggccccggtgctggtggacaccatggtc
ccgttcgtggagcagctgcccgccgggtccatctcggtgatcattgaaccggaaaaggtc
cgccggcgcgcacatgaccttgcggccaccaacgaggagttcctggaagcagcctggtcc
acggcctccgatggcggcacggctccgctggacctcagttcgcaggcgtcggcagcgttg
cactccgccagcttccgttccctggccgaaacccggagcttctcgctggagcacgaggtg
tcctggtggtccatcacgtcgctggcaactgacgaggagctgctgcccgagattgacgtc
ctgaacctccgcgcccgcgaaccgcgcgggtaccagggtgatgtggccgagatgatggac
ttcatcggctcccacgtccgggaccagtggcggatcgtggtggccacggagggtcccggc
ccggcgcagcgcctggcggaactcttccacgacgccgacatcccctgcgccagggtggac
acccttgagaaggagccgcaggcgggcatcatcgaggtgaccactgccgccgtcggacgc
ggttttgtcctggacagcctcaagctggggctgctcaccgaagcagacctgctgggacgg
acctccgcgggctccaccaaggacatgcggcgcatgccgtccaagcggcggaacgccgtg
gacccgttgcagctggtcaacggcgattccgtggtgcacgaacagcacggcattggccgc
ttcatcgaactcatccagcgcaaggtggccggcggcggagacggcgtccgcgagtacctg
gtcctggaatacgccccgtccaagcgcggcgcccccggggaccgcctgtttgtccccaca
gaccagctggaccaggtgacccgctacgttggcggcgatacccctgtgctcagcaagatg
ggcggctccgactgggccagcaccaagtccaaggcacgcaaggccgtcaaggagatcgcc
ggcgagctcatccggctgtactccgcgcggatggcctcaaagggccatgccttcgggccg
gacactccgtggcagcgtgagctggaggaggccttcccgtacgtggagacgccggaccag
ctgaccaccatcaatgaggtcaaggcggacatggagcgcgagatccccatggaccgcctg
gtgtccggcgacgtgggctacggcaaaaccgagatcgccgtccgggccgcgttcaaggcg
gtccaggacgggaagcaggtggcgatcctggtgcccaccaccctgctggcccagcagcac
ttcgaaacgttcaccgagcgcttctccgggttccccctgcgggtcaaagccctgtcgcgg
ttccaagggaccaaggaaaccaaagagaccgtggagggcgtcaagagcggctccgttgac
gtcgtcatcggcacccaccggctgttgtcgaaggacttcgcgttcaaggacctgggcctg
gtgatcgtggacgaggagcagcgcttcggtgtggagcacaaggaagcgctgaagaagatg
cggaccaacgtggacgtgctggccatgagcgccaccccgattccgcggaccctggagatg
tcgttgaccggcatccgggaaacgtccacgctggccaccccgccggaggaacgccatccc
gtgctgacatatgtgggaccgtacacggacaagcagacctcggcagccatccggcgtgag
ctgatgcgcgaaggccagatgttctttgtgcataaccgggtgtccaccatcgaccggacg
gccgcgaagatccgtgaactggttccggaagcacgtgttgaggtggcgcacgggcagatg
tccgagagccggctggagcagatcatcgtggacttctgggaaaagcgtttcgacgtcctg
gtatgcaccaccatcatcgaaaccggcctggacatctccaacgccaacaccctgatcgtg
gacggggccgataaatacggcctctcccagctgcaccagctccgcggccgggtgggccgc
ggccgtgaacgcgcatatgcctacttcctgtacccgtccgagaagcccctgggcgaggtg
gccctggaacgcctcaaggccgtggccacgcacaacgagctcggagccggcatgcagctg
gccatgaaggacctcgaaatccgcggcgccggcaacctgctgggcggcgagcagtccggc
cacatccagggcgtcggcttcgacctctacatccgcctggtgggtgaggcggtggcagac
ttccgcggcgacgccgaggaaaaggccgccgaaatgaagatcgagctgccggtcaacgcc
cacctcccgcacgattatgtgccgggggagcggctccgcctggaggcctaccgcaagctg
gcctccgcgttgacgtacgaggccatcgaggaggtcctggccgagcttgtggaccgttac
ggtgaaccgccgcttccggtccagaacctcatcgccgtggcccgcttccgggtgggtgcc
cgcgaagccggcctgtccgacgtcgcactccaggggaacttcatcaagttctcgccggcg
cagctgccggagtcgaagctgatgcggctgacccggatgtacccgggttcgcagtccaag
cccgccctggacgcggtgctgattccgaagcccaagacggccaggatcggcggccgcgac
ctgcaggacgccgaaatcctggaatgggccaacggggtcatccgcaacatcttctccgac
gcaccgctggcggtgagttag
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