Pseudarthrobacter sulfonivorans: AU252_16455
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Entry
AU252_16455 CDS
T04210
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psul
Pseudarthrobacter sulfonivorans
Pathway
psul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AU252_16455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psul03019
]
AU252_16455
03009 Ribosome biogenesis [BR:
psul03009
]
AU252_16455
Enzymes [BR:
psul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AU252_16455
Messenger RNA biogenesis [BR:
psul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AU252_16455
Ribosome biogenesis [BR:
psul03009
]
Prokaryotic type
rRNA helicases
AU252_16455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALV42541
UniProt:
A0A0U3QDR9
LinkDB
All DBs
Position
3642392..3644599
Genome browser
AA seq
735 aa
AA seq
DB search
MPENQNDATVEAVTVETVAVEFTEAVAPAAEPAAIEAEAPAAPAEEAPAKIEEAPAAETE
APAAKVEEAPKAEETEDEGVKFADLGIDGRVLAALMDVGYEKPSPIQAATIPLLLEGRDV
VGLAQTGTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKH
IDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADE
MLRMGFAEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANT
RQRYLQVMGPHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIP
QQQRERTVEALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAG
RSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDV
AAFRDLISSYEEEHNVPASEIAAALAVMAQGGQPLLVKELAAAPDFQKRERSKDGFGSRG
PTRTLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRADHSLVELPADL
SADQLKALSRTRIGGELIHLELDNGRKPSGDGERGGYQGNRGGGDRGGYQGNRGGGERGG
YSGGGYSGGGAGGGDRGGNFKGNGGFKKEFRKTDGERSSADRGGRSFSDRNERSVGTDAA
RKPRTEGGFKPRNKW
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcaaaatgacgccaccgttgaagcagtaactgtcgaaaccgtcgccgtc
gaattcaccgaggccgttgcccccgcagcagagcccgccgcgattgaagctgaagccccc
gctgctccagctgaagaagcccccgccaagatcgaagaagcgcctgccgctgagactgaa
gcgcctgccgccaaggttgaagaagctcccaaggctgaggaaaccgaagacgagggcgtc
aagttcgccgatctcggcatcgacggccgcgtcctcgccgccctgatggacgtcggctac
gaaaagccttcccccatccaggcagcaaccatcccgctgctgcttgaaggccgcgacgtt
gtgggcctcgcccagaccggtaccggtaagactgcagcattcgcagtaccggcactgtcc
cgcctggccgagctccacgacctcaacggcccgtcccgcaagacccaggccctggtcctg
gctccgacccgcgagctcgcgctccaggttgccgaggccttcacctcgtacgccaagcac
atcgatgacttcaccgtcctccccgtctacggcggctccgcttacggcccccagctcgcc
ggcctgcgccgcggtgcccaggttgttgtcggtactccgggccgtgtgatcgaccacatc
tccaagggttccctggacctgtccgagctccagtacctggtgctggacgaggctgacgaa
atgctgcgcatgggcttcgccgaagacgtggagcagatcttccagcagaccccgtcggac
cgccaggtggcactgttctcggccaccatgccgagccagatccgccggatgtccaagcag
tacctgaacaacccggccgagatctcggtcaagtccaagaccaccaccggcgccaacacc
cgccagcggtacctgcaggtaatgggcccgcacaagcttgacgccctgacccgcatcctc
gaggttgaagagttcgacggcgttatcgccttcgtgcgcaccaagatggctaccgaggac
ctggctgacaagctgaagtcccgcggcttccaggctgccgccatcaacggcgacatcccg
cagcagcagcgcgaacgcactgtcgaggcgctgaaggaaggccgcatcgatatcctggtg
gccaccgacgtcgcggcccgcggcctggacgttgagcgcatcagccacgtggtcaactac
gacatcccgcacgacaccgagtcctacgtccaccgcatcggccgcaccggccgtgcaggc
cgttccggcgacgccatcctgttcatgacgccgcgggagaagtacctgctgcgttccatc
gaaaaggcaacgcgccagccggtggagcagatgcacctgcccacggccgagaccgtcaac
acgctgcgcctgggcaagttcgccgagcgcatcacggagaccctcgagtccgaggacgtt
gccgcgttccgcgacctcatctcctcctacgaggaagagcacaacgtgccggcctcggag
atcgctgctgcgctggcagtgatggcccagggcggtcagcctctgctggtcaaggaactg
gccgcagctcccgatttccagaagcgcgagcgttccaaggacggcttcggctcacgtggc
cccacccgtacgctcacggagggcaacgccacctaccggatcgccgtcggacgccgccag
cgcgttatgccgggttccatcgtgggcgccattgccaacgaaggcggcatctcctcggcc
cagatcggcggcatcgacatccgtgcggaccactcccttgtggagctcccggcggacctc
agtgccgaccagctgaaggctctgtcccgcacccggatcggcggcgagctgatccacctc
gagctggacaacggccgtaagccctccggcgacggcgagcgtggcggttaccagggcaac
cgtggcggcggcgatcgcggcggttaccagggcaaccgtggcggcggcgagcgcggcggt
tactccggtggtggttactccggtggcggcgccggtggcggcgaccgtggcggcaacttc
aagggcaacggcgggttcaagaaggaattccgcaagaccgacggcgagcgtagctccgct
gaccgcggcggccgctccttcagcgaccgtaacgagcgcagcgtgggcaccgacgcggca
cgcaagccgcgcaccgaaggcggcttcaagccccgcaacaagtggtaa
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