Phytohabitans suffuscus: Psuf_018000
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Entry
Psuf_018000 CDS
T06545
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psuf_018000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuu03019
]
Psuf_018000
03009 Ribosome biogenesis [BR:
psuu03009
]
Psuf_018000
Enzymes [BR:
psuu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Psuf_018000
Messenger RNA biogenesis [BR:
psuu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Psuf_018000
Ribosome biogenesis [BR:
psuu03009
]
Prokaryotic type
rRNA processing factors
Psuf_018000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
BCB84487
UniProt:
A0A6F8YEJ4
LinkDB
All DBs
Position
complement(2048345..2051074)
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AA seq
909 aa
AA seq
DB search
MLDNEPEGGDRTGSEPAGDTAESSTTPVKRTRTTRRKAAEPAEPGTEAAAPARRRRKVVV
PDESVVTPEAAPVVEEVAPVKVTRTRRKKAAAAVEPLAEPVTEAVVTEAVVTGPTVVVPA
EVEEAPPSRRRRAALSAPTVLFMAPEAEDEPPAKAARKARAEKAVAEPTAEPEAAPAVAA
AAEEEVAEPAEPARRRRRARRTAEAVEAEPEVVAETTEVEAEEDDEEDEEDEDEEGGGRR
RRRRGRRGRGRGRGTADDEADEEEPAAEAADEDEDEDGEPLTRRRRRRRRKGSGDVESGA
DDGVPTVVKIREPRRGSDEVQGVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARRE
AVDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRASAGTMAGNVYLGKVQNVLPSMEAAFVD
VGRGRNAVLYAGEVNWDATGLEGRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHIAL
SGRHLVYVPHGNASGISRKLPDNERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELARDV
KRLQAQWEDIQARAAEGGAPALLYEEPDLVIRVVRDLFNEDFRELVVQGDGAYDLVESYL
QHVSPDLVARLRRHAGAVDVFAEKRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVIDVN
TGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLT
ECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCEHCKGRGLIIHTEPVPARGS
GSGGAGSGAGDKVKAVAAATRPEPTANGTSGAVSGRRRGRKGATTSVAAEPVEAAPAYDE
DDTMGYDLSRYENAMEDDPVVTDAVEPMRLAGPDDPDGLDEDDDAEEAAAGAGGRRRTRR
GGARRRTRP
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagccagagggcggtgaccggaccggttccgagccggccggcgatacc
gccgaaagcagcaccacccccgtcaagcgcacccggaccacccggcgcaaggcggccgag
ccggccgagccgggtaccgaggcggctgcgccggcccggcggcgccgcaaggtcgtcgta
ccggatgaatcggtcgtaacgccggaggccgcaccggtcgtcgaagaggtcgccccggtc
aaggtcacccgtacgcggcgaaagaaggcggcggccgccgtcgagccgctggccgagccc
gtcaccgaggccgtggtgaccgaggctgtggtgaccgggcccaccgtggtcgtgccggcg
gaggtcgaggaggcgccgccgagccggcgccgccgggccgcgctgtccgccccgacggtg
ctcttcatggcacccgaggccgaggacgagccgcccgccaaggccgcccgcaaggcgcgc
gccgagaaggccgtcgccgagcccaccgccgagccggaggccgccccggcggtggccgcc
gccgccgaggaggaggtcgcggagccggccgagcccgcgcgccggcggcgccgcgcacgg
cgtaccgccgaagccgtcgaagcggagccggaggtcgtcgcggagaccaccgaggtggag
gccgaggaagacgacgaggaagacgaggaagacgaggacgaggaaggcggcggccgccgc
cgcaggcgccgcggccggcgtggccggggtcgcgggcgcggcacggccgacgacgaggcc
gacgaggaggagcccgcggccgaggcggccgacgaggacgaagacgaggacggcgagccg
ctgacccgccggcgccgccggcggcggcgaaagggctccggcgacgtcgagtccggcgcc
gacgacggcgtgccgacggtcgtcaagatccgcgagccgcggcggggctccgacgaggta
cagggcgtctccggctcgacccgcctcgaggccaagcgccagcgccgccgggacggccgc
gagcagcgccgcacccgcccgccgatcctgagcgagtccgagttcctggcccgccgcgag
gcggtcgaccgcgtgatggtcgtgcgccagcgcggtgaccgcacccagatcgcggtgctc
gaagacggcgtgctggtcgagcactacgtgacccgcgcctcggccggcacgatggccggc
aacgtctacctcggcaaggtgcagaacgtcctgcccagcatggaggcggccttcgtggac
gtggggcggggccgcaacgccgtgctctacgccggtgaggtcaactgggacgccaccggc
ctggaggggcgggcccgctcgatcgagcaggcgctcaagtccggcgactcggtgctcgtg
caggtcaccaaggacccgatcggccacaagggcgcccggctcaccagccacatcgccctg
tccgggcgtcacctggtgtacgtgccgcacggcaacgcctcgggcatcagccgcaagctg
cccgacaacgagcgcaagcgcctgcgtgacgtgctgaagaagctcgtgccggacggcgcc
ggcgtgatcgtgcgtaccgccgccgagggcgccagcgaagacgagctggcccgcgacgtc
aagcggctgcaggcgcagtgggaggacatccaggcgcgggccgccgagggtggcgcgccg
gcgctgctctacgaggagcccgacctcgtgatccgggtcgtccgcgacctgttcaacgaa
gacttccgcgagctggtggtgcagggcgacggcgcgtacgacctggtcgagtcgtacctg
cagcacgtgtcgcccgacctggtggcgcggttgcggcggcacgccggcgcggtcgacgtc
ttcgccgagaagcggatcgacgagcagatcctcaaggggctggaccgcaaggtgttcctg
ccctcgggcggccacctggtcatcgaccgcaccgaggcgatgacggtcatcgacgtcaac
accggcaagtacaccggtgcgggcggcaacctcgaggagaccgtcacccgcaacaacctg
gaggcggccgaagagatcgtgcgccagctccggctgcgcgacctgggcggcatcgtcgtg
atcgacttcatcgacatggtgctggagtccaaccgcgagctcgtgctgcgccgcctcacc
gagtgcctcgggcgcgaccgcaccaagcaccaggtcaccgagatcacctcgctcggcctc
gtgcagatgacccgcaagcggatcggcgcggggctgctggaggcgttcagcgagacctgc
gagcactgcaaggggcgcggcctgatcatccacaccgagccggtgccggcgcggggctcc
ggctccggtggcgcgggctcgggcgcgggcgacaaggtcaaggccgtcgccgcggccacg
cgtccagagccgacggccaacgggacgtccggcgccgtcagcgggcgccgccggggccgc
aagggcgccacgacctccgtcgcggccgagccggtcgaggccgcgccggcctacgacgag
gacgacacgatggggtacgacctgtcgcgttacgagaacgcgatggaggacgacccggtc
gtgaccgacgccgtggagccgatgcgcctggccggcccggacgacccggacgggctcgac
gaggacgacgacgccgaggaggcggccgccggtgcgggtggccggcggcggacccggcgc
ggtggtgcccggcggcgcacccgcccgtag
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