Phytohabitans suffuscus: Psuf_040250
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Entry
Psuf_040250 CDS
T06545
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Psuf_040250 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuu03021
]
Psuf_040250 (rpoB)
03400 DNA repair and recombination proteins [BR:
psuu03400
]
Psuf_040250 (rpoB)
Enzymes [BR:
psuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Psuf_040250 (rpoB)
Transcription machinery [BR:
psuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Psuf_040250 (rpoB)
DNA repair and recombination proteins [BR:
psuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Psuf_040250 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCB86712
UniProt:
A0A6F8YKS6
LinkDB
All DBs
Position
4357824..4361255
Genome browser
AA seq
1143 aa
AA seq
DB search
MAASRPAKTSRTSSAFAPRRISFGRITEHLEVPNLLAIQTESFDWLVGNEAWQGRSADDP
HARSGLAEILDEISPIEDFSGTMSLSFSAPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFIINGTERVVVSQLVRSPGVYFDKQPDKTSDRDLS
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWTNEQIRERFGWSELMMT
TLEKDHIAGQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNSKRYDVAKVGRYKFNKKL
EIDIQITTGTLTVEDIVATVEYLCRLHSGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFGRVNPFGFI
ETPYRKVVEGRVTDQIDYLTADEEDRFVKAQANAPLKSDGSFAEDRVLVRRKGGEVDFVP
PSSVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAESPLVGTGMEY
RAAVDAGDVVVAEVGGVVEDLCADYVTVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDEGEMALGRNLLVAFMPWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWVAKTGWKIEGEESEWKRALKSIGADTSEPDTNVATPVFDGAKEAEISGLLASSL
PNRDGVQLVGGSGKAQLFDGRSGEPLPDPIAVGYIYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRREPSSV
EEV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagtcgtacgtcgagcgcatttgctccccgccgg
atttcattcggcaggatcaccgaacatcttgaggtccccaacctcctcgccatccagacc
gagtccttcgactggctggttggcaacgaggcgtggcagggccggtcggctgatgacccg
cacgcccgctccggtctcgcggaaatcctcgacgagattagtccgattgaggacttctcg
ggcaccatgtccctttccttctccgccccccgcttcgacgaggtcaaagcctcgatcgag
gagtgcaaggagaaggatctgacgtactgcgctccgctcttcgtaaccgcggagttcacc
aacaacaccactggcgagatcaagagccagacggtgttcatgggtgacttcccgatgatg
acccccaagggcacgttcatcatcaacggcaccgagcgcgtggtcgtcagccagctcgtc
cgctcgccgggcgtctacttcgacaagcagccggacaagacgtccgaccgcgacctctcc
agcgtcaaggtcatcccgagccggggtgcctggctggagttcgacatcgacaagcgcgac
accgtcggcgtccgcatcgaccgcaagcgccgccaggccgtcacggtcctgctcaaggcc
atcggctggaccaacgagcagatccgcgagcggttcggctggtccgagctgatgatgacc
accctggaaaaggatcacatcgccggccaggacgaggcgttgttggacatctaccgcaag
ctgcggcctggtgagccgccgacgcgggagaacgcccagaccctgctcgacaacctcttc
ttcaactcgaagcggtatgacgtcgccaaggtcgggcgctacaagttcaacaagaagctc
gagatcgacatccagatcaccacgggcacgctgaccgtcgaggacatcgtcgccacggtt
gagtacctctgccgcctgcactcgggcgaggagggatacgaggccgacgacatcgaccac
ttcggcaaccggcgcctccgcaccgtgggcgagctgatccagaaccaggtccgggtcggc
ctgtcccggatggagcgggtcgtccgcgagcggatgaccacgcaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgcccggtggtggcggcgatcaaggagttcttcggc
acctcgcagctgtcccagttcatggaccagaccaaccctctggcgggcctgacccaccgc
cggcgcctctcggcgctgggccccggtggtctgtcccgcgagcgggccggcttcgaggtt
cgcgacgtgcacccgtcccactacggccggatgtgcccgatcgagaccccggaaggtccc
aatatcggcctgatcggcgcgctctccacgttcgggcgggtcaacccgttcggcttcatc
gagacgccgtaccggaaggtcgtcgagggtcgggtcaccgaccagatcgactacctgacg
gcggacgaggaggaccggttcgtcaaggcccaggccaacgcaccgctgaagtccgacggc
agcttcgccgaagaccgggtgctggtccgccggaagggcggtgaggtcgacttcgtcccg
ccgtcctcggtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgcc
atgatcccgttcctcgagcacgacgacgccaaccgggcactgatgggcgccaacatgcag
cgccaggccgtgccgctggtcaaggccgagtcgccgctggtgggcaccggcatggagtac
cgggccgccgtcgacgccggcgacgtggtcgtcgccgaggtcggcggcgtggtcgaggac
ctgtgcgccgactacgtgacggtgcaccaggacgacggtcaccgccgcacctacctgctg
cacaagttccgccgctccaacgccggctcctgcgtcaaccagaagccggtcgtcttcgag
ggcgaccgcgtcgaggccggccaggtcatcgccgacggtccgtgcaccgacgagggcgag
atggcgctcgggcgcaacctgctcgtggcgttcatgccctgggagggtcacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtgcagcaggacgtgctcacctcgatccacatc
gaggagcacgaggtcgacgcccgcgacaccaagctgggtccggaggagatcacccgcgac
atcccgaacgtcagcgaggaaatgctcgccgacctcgacgagcgcggcatcatccggatc
ggcgcggaggtcgtgcccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
gagctgacccccgaggagcggctgcttcgcgcgatcttcggtgagaaggcgcgcgaggtc
cgggacacctcgctgaaggtgccgcacggcgagaccggcacggtcatcggcgtccgcacc
ttctcccgcgaggacggcgacgagctgcccccgggcgtcaacgagctggtccgcgtctac
gtggcccagaagcgcaagatccaggacggtgacaagctcgcgggccgccacggcaacaag
ggcgtcatctccaagatcctgccggtcgaggacatgccgttcctggaggacggcacgccg
gtcgacatcgtgctcaacccgctgggtgtgccctcgcgtatgaacatcggccaggtcctg
gagacccacctcgggtgggtggccaagaccggctggaagatcgagggtgaagagtccgag
tggaagcgggcgctcaagtcgatcggtgccgacacgtcggagccggacaccaacgtggcg
acgccggtcttcgacggcgccaaggaggcggagatcagcggcctgctggccagctccctg
cccaaccgcgacggcgttcagctcgtcggcggctcgggcaaggcgcagctgttcgacggc
cgttccggtgaaccgttgccggacccgatcgcggtcggctacatctacatcctgaagctt
aaccacctggtcgacgacaagatccacgcgcgttcgaccggcccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggagtgc
tgggcgatgcaggcgtatggcgccgcctacgccctgcaggagctgctcacgatcaagtcc
gacgacgtgctcggccgtgtgaaggtctacgaggccatcgtcaagggtgaaaacatcccc
gagcccggcatcccggagtcgttcaaggtgctcctcaaggagctccagtcgctgtgcctc
aatgtcgaggtgctgagcagcgacggcgtggcgctggagatgcgggagaccgacgacgag
gtcttccgggccgcggaggagctgggtatcgacctgtctcggcgtgagccaagcagcgtc
gaggaagtctga
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