Phytohabitans suffuscus: Psuf_040260
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Entry
Psuf_040260 CDS
T06545
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Psuf_040260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuu03021
]
Psuf_040260 (rpoC)
03400 DNA repair and recombination proteins [BR:
psuu03400
]
Psuf_040260 (rpoC)
Enzymes [BR:
psuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Psuf_040260 (rpoC)
Transcription machinery [BR:
psuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Psuf_040260 (rpoC)
DNA repair and recombination proteins [BR:
psuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Psuf_040260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BCB86713
UniProt:
A0A6F8YKZ3
LinkDB
All DBs
Position
4361358..4365245
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTGVDTEARHRDMSTIENELLAEKRQSENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKESGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFNGGMGAEAIKSLLENMDLDAEADNLREIIRSGKGQRKIRALKRLKVVA
AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLKAEAKGQGR
EFSSDAEARMAFDNGELALGVPIRIRLRGVSEVDNGAGQPRWTAPEGWTPGEPLIVDTTL
GRVLFNETLPQGYRYVNYEIRKSQLSAIVNDLAERFPKVALAATLDALKEAGFHWATWSG
VTIGMEDVIPPARKPEIMERYEKEADRIDKQYQRGLMTAEERRGELIEIWTKATNEVSKE
METSLPQENPLWVMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKSSYREGLSVVE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMTVGSHLDGQ
LVVHEHAETGVHARTLADDVKGADGTLVAERGTDLNSIVVDKLVAAGVETVRVRSVLTCE
SKLGVCAACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIIVPDDGSDEIVHDKISKRVRLRA
HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGSTEFLPGVLVDRAVFESENRRLVAEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAINARSDSLIGLKENVIIGKLIPAGTGISKYRNIRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacttcttcgacgagttgcgaatcggcctggcgacagctgacgacatt
cgccagtggtcgcacggcgaggtgaagaagcccgagacgatcaactaccgcacgctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtcctcagcgggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctcgaaggtccgccgtgagcggatgggccacatcgagctggccgcctcg
gtcacccacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctg
gcgcccaaggatctcgaaaagatcatctacttcgcgtcgtacgtggtgaccggtgtggac
accgaggcccgccaccgcgacatgtcgacgatcgaaaacgagctcctggcggagaagcgg
cagtcggaaaacagccgcgactcggagatcgagaagcgcgccgccaagctcgaggccgac
ctggccgagctcgaggcggagggtgccaaggccgacgtgcggcgcaaggtcaaggagtcc
ggcgagcgcgagatgcgccagatccgcgaccgggcgcagcgcgagatcgaccggctcgac
gaggtgctcgacacgttccgcaagctggagcccaagcagctggtcaccgacgagctgctc
taccgggagctgcgcgaccggttcggcgagtacttcaacggcggcatgggtgccgaggcg
atcaagtccctgctggaaaacatggacctggacgccgaggcggacaacctccgcgagatc
atccggtccggcaagggccagcggaagatccgggcgctcaagcggctcaaggtcgtggcg
gcgttcctcaacacccgcaactcgccgctcggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcgcctgatcgacctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggtccgggtaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccggcaaaacctgctcggcaag
cgcgtcgactactccggccgttccgtgatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgatctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtgtgggacgtgctggaagaggtcatcggggagcacccggtgctgctcaaccgc
gcgccgaccctgcaccgcctgggcatccaggccttcgagccgcagcttgtcgagggcaag
gcgatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacgtgccgctgtcggccgaggcccaggccgaggcgcggatcctgatgctg
tcgtccaacaacatcctcaagccggccgacggcaagccggtgacgatgcccacccaggac
atggtcatcgggctgtaccacctgacccacctcaaggcggaggccaaggggcagggccgg
gagttcagctcggacgccgaggcgcggatggccttcgacaacggcgagctggcgctgggt
gtgcccatccggatccggctgcgcggtgtgtccgaggtcgacaacggtgccggccagccc
aggtggaccgcccccgaggggtggacgcccggcgagccgctgatcgtcgacaccacgctg
ggtcgggtgctcttcaacgagaccctcccgcagggctaccggtacgtgaactacgagatc
cgcaagagccagctgtcggcgatcgtcaacgacctcgccgagcggttcccgaaggtggca
ctggcggcgacgctggacgcgctcaaggaggccggcttccactgggccacctggtccggc
gtcacgatcggcatggaagacgtcatcccgccggcgcgcaagcccgagatcatggagcgg
tacgagaaggaagccgaccggatcgacaagcagtaccagcgcggtctgatgactgccgag
gagcgccgcggcgagctcatcgagatctggaccaaggcgaccaacgaggtttccaaggag
atggagacttcgctgccgcaggaaaacccgttgtgggtcatgatcaactcgggtgcccgc
ggtaacctgctccagctccgccagatcgcggcgatccgtggcctggtggccaaccccaag
ggtgagatcatcccgcggccgatcaagtccagctaccgcgagggcctgtccgtggtggag
tacttcatctccacccacggtgcccgcaagggtctggccgacaccgcgctgcgtacggcc
gactcgggttacctgacccggcgtctggtcgacgtgtcgcaggacgtgatcatccgcgag
gaggactgcggcaccgaccgcgccatcccgatgacggtcggcagccacctcgacggtcag
ctcgtggtgcacgagcacgccgagaccggtgtgcacgcccgcaccctggccgacgacgtc
aagggcgccgacggcacgctggtggccgagcggggcaccgacctcaactcgatcgtggtc
gacaagctggtcgcggcgggcgtcgagacggtgcgcgtccgcagcgtgctcacctgcgag
tccaagctgggcgtctgcgcggcctgctacggccgttcgctgccgaccggcaagaccgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagcccggcacccag
ctgacgatgcgtacgttccacaccggtggtgtcgccggtgaggacatcacgcagggtctg
ccgcgtgtgcaggagatcttcgaggcgcgcgtgcccaagggcaaggcgccgatcgccgac
accccgggccggatccggatcgaggacggcgagcgttcgcggaagatcatcatcgttccc
gacgacgggagcgacgagatcgtccacgacaagatctccaagcgcgtgcgcctgcgggcg
cacgacggagaccacgtcgaggtcggcgagaagctcaccgagggcacgatcgacccgcac
gagctcctgcggatcctcggcccgcgcgcggtgcaggtccacctgacccaggaggtccag
gaggtctaccgctcgcagggtgtgctcatccacgacaagcacatcgagatcatcattcgg
cagatgctgaagcgggtcacggtgatcgactcgggctccaccgagttcctgccgggcgtg
ctggtcgaccgggccgtcttcgagtcggaaaaccgccggctcgtggcggagggcggcgag
cccgccgccggtcgccccgtgctcatgggtatcaccaaggcctcgctggcgaccgactcc
tggctctcggcggcctccttccaggagaccacccgggtcctgaccgacgcggcgatcaac
gcgcgcagcgactcgctgatcggtctcaaggagaacgtcatcatcggcaagctcatcccg
gccggtaccggcatcagcaagtaccgcaacatccgggtcgagcccaccgaagaggcgaag
gccaaggtgtactcgatgaccggctaccccgagaccgactacggattcggaccggccagc
gggcaggcagtgccgctggacgacttcgacttcggctcctaccgctga
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