Pseudoxanthomonas suwonensis J1: WQ53_01600
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Entry
WQ53_01600 CDS
T04241
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQ53_01600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuw03019
]
WQ53_01600
03009 Ribosome biogenesis [BR:
psuw03009
]
WQ53_01600
Enzymes [BR:
psuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WQ53_01600
Messenger RNA biogenesis [BR:
psuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WQ53_01600
Ribosome biogenesis [BR:
psuw03009
]
Prokaryotic type
rRNA helicases
WQ53_01600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF5817_CT
AAA_19
P-loop_SecA
adh_short
Flavi_DEAD
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKC85653
UniProt:
A0A0E3YZL3
LinkDB
All DBs
Position
complement(373691..375604)
Genome browser
AA seq
637 aa
AA seq
DB search
MSAPAQETPAAPRFGDLGLPEPLLAALAEVGYESPSPIQAATIPALLSGRDVLGTAQTGT
GKTAAFALPVLAKLDPSRNKPQALVLAPTRELAIQVAEAFQRYATKMPSFHVLPIYGGQG
YGPQLAALRRGVQVVVGTPGRVIDHLTRGSLDLSQLECLVLDEADEMLRMGFIDDVEAVL
QKTPPTRQVALFSATMPPPIRRIAQTYLRDPVEVNIAAKTTTAANIRQRYWFVSGLHKLD
ALTRILEAEPFDAMIVFARTKAATEELAEKLQARGVAAAAINGDMQQQQRERTIAQLKDG
KLDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREK
GMLRAIERATRQPIEEMRLPSVEAVNDRRVARFFEKISGTLETGGLEPYRELMDRYAGEH
DVPSSEVAAALAKLLQGGTPLLLDASEPPPRFEPRFEREPRERAARPGPGTRAPRDPAAG
DADGSGARPPRTHDASDFGSRPPRAAKPPRSPPEQGMETYRVEVGHMHGVKPGNIVGAIA
NEAGLESRFIGRIDIHDDHSILDLPEGMPPEIMIHLQKAWVVGQQLRISRWDGSHAPSAQ
APKGKFRPHGGARPGKFGGKPGGPAKPHRKGPPKPHG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccccgcccaagaaacccctgccgcgccgcgcttcggcgacctcggcctgccc
gagccgttgctggccgccctggccgaggtcggctacgagtcgccgtcgccgatccaggcc
gccaccatccccgcattgctgtccggccgcgacgtgctgggcaccgcccagaccggcacc
ggcaagaccgccgcgttcgcgctgccggtgctggccaagctggatccgtcgcgcaacaag
ccgcaggcgctggtgctggcgccgacccgcgagctggcgatccaggtggccgaggcgttc
cagcgctatgcgacgaagatgcccagcttccacgtgctgccgatctacggcgggcagggc
tacggcccgcagctggcggcactgcgccgcggcgtgcaggtcgtggtcggcaccccgggc
cgggtgatcgaccatctcacccgcggctcgctggacctgtcgcagctggaatgcctggtc
ctggacgaggccgacgagatgctgcgcatgggcttcatcgacgacgtcgaggcggtgctg
cagaagaccccgccgacccgccaggtcgcgctgttctcggcgaccatgccgccgccgatc
cggcgcatcgcccagacctacttgcgcgatccggttgaggtcaacatcgcggccaagacc
accaccgcggccaacatccgccagcgctactggttcgtcagtggcctgcacaagctcgac
gcgctgacccgaatcctggaggccgagccgttcgacgcgatgatcgtgttcgcccggacc
aaggccgccaccgaggaactggccgagaagctgcaggcgcgcggcgtggccgccgcggcg
atcaacggcgacatgcagcagcagcagcgcgagcgcaccatcgcccagctcaaggacggc
aagctggacgtgctggtggccaccgacgtggccgcgcgcgggctggacgtggaacggatc
agccacgtgctgaactacgacatcccgtacgacaccgaaagctacgtgcaccggatcggc
cgcaccggccgtgccgggcgcagcggcgaggcgatcctgttcgtcaccccgcgcgagaag
ggcatgctgcgcgcgatcgagcgcgccacccggcagccgatcgaggagatgcgcctgccg
tcggtcgaggcggtgaacgatcgccgtgtcgcgcgcttcttcgagaagatctccggcacg
ctggaaaccggcgggctggagccgtaccgcgagctgatggaccgctatgcgggcgagcac
gacgtgccgtcctcggaagtcgccgcggcgctggccaagctgctgcagggcggcacgccg
ctgctgctggacgcctccgagccgccgccgcgcttcgagccgcgtttcgagcgcgagccg
cgcgagcgggcggcgcgtccggggcccggcacgcgcgcgccgcgcgatccggcggcaggc
gacgccgacggttccggagcgcgtccgccgcggacgcacgacgcgtccgatttcgggtcg
cgcccgccgcgcgcggccaagccgccgcgttcgccgcccgagcagggcatggagacctac
cgggtcgaggtcggccacatgcacggggtcaagcccggcaacatcgtcggcgcgatcgcc
aacgaggccggactggaaagccgcttcatcggccgcatcgacatccatgacgaccactcg
atcctcgacctgcccgagggcatgccgccggaaatcatgatccacctgcagaaggcctgg
gtggtcggccagcagctgcggatcagccgctgggacggcagccacgcgccctcggcgcag
gcgccgaagggcaagttccggccgcatggcggcgcccgtccgggcaagttcggcggcaag
ccgggtggccccgccaagccgcaccgcaagggaccgccgaagccgcacggctga
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