Pseudoxanthomonas suwonensis J1: WQ53_03790
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Entry
WQ53_03790 CDS
T04241
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WQ53_03790 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuw03021
]
WQ53_03790 (rpoB)
03400 DNA repair and recombination proteins [BR:
psuw03400
]
WQ53_03790 (rpoB)
Enzymes [BR:
psuw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WQ53_03790 (rpoB)
Transcription machinery [BR:
psuw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WQ53_03790 (rpoB)
DNA repair and recombination proteins [BR:
psuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WQ53_03790 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
AKC86023
UniProt:
A0A0E3YZI2
LinkDB
All DBs
Position
complement(869247..873401)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTTYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQADTDAAKRRDTGLHAALKS
VFPISSYSGNAALEYVGYKLGEPVFDERECRNRGLSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTEHGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALYTRIDRRRKLPVTILLRALGYNNEEMLRAFFEINTFHIDPS
EGVQLELVPERLRGETLNFDLADGEKVIVEAGKRITARHVRQLEQSQIAALAVPDEYLLG
RILAHDVVDANTGELLASANDEISDEQLAAFRKAGVAAVGTLWVNDLDRGPYLSNTLRID
PSRTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKDV
LGPAVLFDRKYFGERNDEDSKALVAAQGDTSDILDVLRVLTEIRNGRGTVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVFARTNQYGFLETPYRKVVDGRITDEVDYLSAIEENEYVIAQVNATHDGKGKLTEL
FVPCRHQGESLLKPPAEIHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPT
LRSQTPLVGTGIERAVARDSGVTVNARRGGVIEQVDAGRIVVKVNESEISGEHDAGVDIY
TLTKYTRSNQNTCINQTPLVHVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVQEDRYTTIHIEELTCAARDTKLGPEEITADIPNVSEQALNRLDESGVV
YIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRAKQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGPGLK
KGDTLNDAYLDGLKKADWFLLRMKDEDASEAIERAQKQIAAHEKEFERRFDDKRGKITQG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGESVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLDAQNAVSELRKFLEDIYNHDRTTVGER
VDLSQFSDEELLGMAKNLTSGVPMATPVFDGASEAEIKRMLELAELPSSGQTVLHDGRTG
EAFERPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMVAGMPESFNVLVKEIRSLAINME
LEDE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtattcgttcaccgagaagaagcgcatccgcaaggatttcggcaagcagcgc
tcgatcctcgaagtgccgttcctgctggccatccaggtcgattcctaccgcgagttcctg
caggccgacaccgatgcggccaagcgccgcgacaccggcctgcacgccgccctgaagtcg
gtgttcccgatctccagctacagcggcaacgccgccctcgaatacgtcggctacaagctt
ggcgagccggtgttcgacgagcgcgagtgccgcaaccgcggcctgtcctacggcgcgccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcctcgaccaaggcgatcaag
tacgtcaaggagcaggaggtctacctcggcgagatcccgctgatgaccgagcacggcacg
ttcatcgtgaacggcaccgagcgcgtcatcgtctcgcagctgcaccgcagcccgggcgtg
ttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccctaccgcggctcctggctggacttcgagttcgacccgaaggacgcgctgtac
acccgcatcgaccgccgccgcaagctgccggtgacgatcctgctgcgcgcgctgggctac
aacaacgaagagatgctgcgtgcgttcttcgagatcaacaccttccacatcgacccgtcc
gagggcgtgcagctggagctggtgcccgagcgcctgcgcggcgagaccctgaacttcgac
ctggccgatggcgagaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacgtg
cgccagctggagcagtcgcagatcgccgcgctggcggtgccggacgagtatctgctcggc
cgcatcctggcccacgacgtggtcgacgccaacaccggcgagctgctggccagcgccaac
gacgagatcagcgacgagcagctggccgcgttccgcaaggccggcgtcgccgccgtgggc
acgctgtgggtcaacgacctggaccgtggcccgtacctgtccaacaccctgcgcatcgac
ccgagccgcacccagctggaagcgctggtcgagatctaccggatgatgcgtccgggcgag
ccgccgaccaaggaggccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtcggccgtgggccggatgaagttcaaccgccgcgtcggccgcaaggacgtg
ctcggcccggccgtgctgttcgacaggaagtacttcggcgagcgcaacgacgaggattcc
aaggcgctggtggccgcccagggcgacacctccgatatcctcgatgtgctgcgcgtgctg
accgagatccgcaacggccgcggcaccgtggacgacatcgaccacctgggcaaccgccgc
gtgcgttcggtcggcgagatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggaacggctgtcgatggcggagtcggaaggcctgaccccgcaggagctg
atcaacgcgaaacccgtcgccgccgcgatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtcacccacaagcgccgcgtctcggcg
ctgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtgcacccg
acccactacggccgcgtctgcaccatcgagaccccggaaggcccgaacatcggcctgatc
aactcgctggcggtgttcgcccgcaccaaccagtacggcttcctggagacgccgtaccgc
aaggtcgtggacggccgcatcaccgacgaggtcgactacctgtcggcgatcgaggagaac
gagtacgtcatcgcccaggtcaacgccacccatgacggcaagggcaagctgaccgagctg
ttcgtgccctgccgccatcagggcgagtcgctgctcaagccgccggccgagatccactac
atggacgtctcgccgatgcagaccgtgtcggtcgccgccgcgctggtcccgttcctggag
cacgacgacgccaaccgcgcgctgatgggcgcgaacatgcagcgccaggcggtgccgacg
ctgcgttcgcagaccccgctggtgggcaccggcatcgagcgcgccgtggcgcgcgattcg
ggtgtgaccgtgaacgcccgccgcggcggtgtgatcgagcaggtcgacgccggccgcatc
gtggtcaaggtcaacgagtcggagatctccggcgagcacgatgccggcgtggacatctac
accctgaccaagtacacccgctccaaccagaacacctgcatcaaccagaccccgctggtg
cacgtgggcgacgtggtggcgcgcggcgacgtgctggccgatggcccgtccaccgacatc
ggcgaactggccctgggccagaacatgctgatcgcgttcatgccctggaacggctacaac
ttcgaggactcgatcctgctgtcggagcgtgtggtccaggaagaccgctacaccacgatc
cacatcgaggagctgacctgcgcggcccgcgacaccaagctgggtccggaggagatcacc
gccgacatcccgaacgtctccgagcaggcgctcaaccgcctggacgagtcgggcgtggtg
tacatcggcgccgaggtccgcgccggcgacatcctggtcggcaaggtcacgccgaagggc
gagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgccaagcagatcgaggaaagc
gagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagcggcgatc
tacgcgcgcctgcgctcgcagatcgtgggcaaggtcgccaacggcggcccgggcctgaag
aagggcgacaccctcaacgacgcctacctggacggcctgaagaaggccgactggttcctg
ctgcggatgaaggacgaggacgcctccgaggcgatcgagcgcgcgcagaagcagatcgcc
gcgcacgagaaggagttcgagcgccgcttcgacgacaagcgcggcaagatcacccagggc
gacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtgaagcgccgg
atccagccgggtgacaagatggccggccgccacggcaacaagggcgtggtgtcgaacgtg
gttccggtcgaggacatgccgtacatggcctcgggcgagtcggtggacatcgtgctcaac
ccgctgggcgtgccttcgcgcatgaacatcggccagatcctggaagtgcacctgggctgg
gcggccaagggcctgggtcgcaagatccagcgcatgctcgatgcccagaacgccgtctcc
gagctgcgcaagttcctggaggacatctacaaccacgaccgcaccacggtcggcgagcgt
gtggacctgtcccagttcagcgacgaggaactgctgggcatggccaagaacctgaccagc
ggcgtgccgatggccactccggtgttcgacggcgccagcgaggccgagatcaagcgcatg
ctcgagctggccgaactgccgagcagcggccagaccgtgctgcacgacggccgcaccggc
gaagcgttcgagcgcccggtcacggtcggctacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggcaaccacgagatggtcgccggc
atgccggaatccttcaacgtcctggtgaaggaaatccgctcgctggccatcaacatggag
ttggaggacgagtaa
DBGET
integrated database retrieval system
