Pseudoxanthomonas suwonensis J1: WQ53_09440
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Entry
WQ53_09440 CDS
T04241
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQ53_09440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuw03021
]
WQ53_09440
03019 Messenger RNA biogenesis [BR:
psuw03019
]
WQ53_09440
Transcription machinery [BR:
psuw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WQ53_09440
Messenger RNA biogenesis [BR:
psuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WQ53_09440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKC86941
UniProt:
A0A0E3UN73
LinkDB
All DBs
Position
complement(2271333..2273015)
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AA seq
560 aa
AA seq
DB search
MSENTLPEAPGSEDAPAEKRARKRVSKPADAGAGEAPAAPAPAASAPPPPQAPAPAQSGG
DAPSAPAPTSAENAGGQNGQPQGDGDREQGGRNNRRDRFRNRRDRQRDRFRDDGGMQDDG
GNNQMPHPPRPHPGVPEGFPQYSLGDLKRMPAHKLLEIAEQLQIHEGVARARKQDVIFAL
LKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLS
GRIRWPKDGERYFALAVVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDIT
GRILDLMAPQGKGQRALIVSQPKAGKTMMMQQIATAITTNHPDVHLIVLLIDERPEEVTE
MQRTVRGEVISSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVV
PSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLSIIATALIDTGSKMDEVIYEEFKGT
GNSEVHLSRRISEKRVFPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIGAMEF
MLDKMKNTKSNDEFFASMRR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgagaacaccctgcctgaagcgcccgggagcgaagacgcacccgccgagaagcgt
gcgcgcaagcgcgtgagcaagccggccgacgccggcgccggtgaggcgcccgccgccccg
gcgcccgccgcttcggctcccccgcccccccaggcccccgccccggcccagtccggtggc
gacgccccgtccgcccccgcccctacctcggccgaaaacgccggcggccagaatggtcag
ccgcagggcgacggcgaccgcgagcagggcggccgcaacaaccgccgcgaccgcttccgc
aaccgccgcgaccgccagcgcgaccgcttccgcgacgacggcggcatgcaggatgacggc
ggcaacaaccagatgccgcacccgccgcgcccgcacccgggcgtgccggagggcttcccg
cagtactcgctgggcgacctgaagcggatgccggcgcacaagctgctggagatcgccgag
cagctgcagatccacgagggcgtggcccgcgcccgcaagcaggacgtgatcttcgccctg
ctcaaggtgctgacccgccacggcgagggcgtggccgccgacggcgtgctggagatcctg
cccgacggcttcggcttcctgcgcgcggccgaggccagctacctggccggcccggacgac
acctacatctcgcccagccagatccgccgcttcaacctgcgcaccggcgaccacctgtcc
ggccgcatccgctggcccaaggacggcgagcgctacttcgccctggccgtggtcgacacg
atcaacggcgaaccgctggaagcgagcaagaacaaggtcctgttcgagaacctgaccccg
ctgttcccgcgccggcgcttccgcctggagcgcggcgacggctcgaccgaggacatcacc
ggccgcatcctcgacctgatggcgccgcagggcaagggtcagcgcgcgctgatcgtctcc
cagcccaaggcgggcaagacgatgatgatgcagcagatcgccaccgcgatcaccaccaac
catccggacgtgcacctgatcgtgctgctgatcgacgagcgcccggaggaagtgaccgag
atgcagcgcaccgtgcgcggcgaggtcatctcctcgaccttcgacgagccggccgcgcgc
cacgtgcaggtcgccgagatggtgatcgagcgggccaagcgcctggtcgagcacaagaag
gacgtggtgatcctgctcgactcgatcacccgcctggcacgcgcctacaacaacgtcgtg
cccagctccggcaaggtgctgaccggcggcgtggacgccaacgccctgcaccgcccgaag
cgcttcttcggcgcggcgcgcaacgtcgaggaaggcggctcgctctcgatcatcgccact
gccctgatcgacaccggcagcaagatggacgaggtgatctacgaggagttcaagggcacc
ggcaactccgaggtgcacctgtcgcggcgcatctccgagaagcgcgtgttcccggccatc
gacatcaaccgctccggcacccgccgcgaggacctgctgatcgagccggagctgctgcag
aagatctggatcctgcgcaagctgctgcacccgatggacgagatcggcgcgatggaattc
atgctcgacaagatgaagaacaccaagtccaacgacgagttcttcgcttcgatgcggcgc
tga
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