KEGG   Pseudoxanthomonas suwonensis J1: WQ53_12385
Entry
WQ53_12385        CDS       T04241                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
psuw  Pseudoxanthomonas suwonensis J1
Pathway
psuw02024  Quorum sensing
psuw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psuw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WQ53_12385
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    WQ53_12385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psuw03019]
    WQ53_12385
   03036 Chromosome and associated proteins [BR:psuw03036]
    WQ53_12385
Messenger RNA biogenesis [BR:psuw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     WQ53_12385
Chromosome and associated proteins [BR:psuw03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    WQ53_12385
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AKC87430
UniProt: A0A0E3UP14
LinkDB
Position
2987306..2987581
AA seq 91 aa
MSKGQSLQDPFLNALRRERVPVSVYLVNGIKLQGTIESFDQFVVLLRSTVSQMVYKHAIS
TVVPSRNVRVGPGGGYVQQPGESGEGGDEAE
NT seq 276 nt   +upstreamnt  +downstreamnt
atgtccaagggacaatcgctgcaggatcctttcctgaacgcactgcgccgcgaacgcgtg
ccggtgtcggtctacctggtgaacggcatcaagttgcagggtacgatcgaatccttcgac
cagttcgtggtgctgctgcgcagcaccgtcagccagatggtctacaagcacgccatttcc
accgtcgtgccgtcgcgcaatgtccgggtcggcccgggcggcggctacgtgcagcagccg
ggcgaatccggggaaggcggcgacgaggccgagtga

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