Pseudoxanthomonas suwonensis J1: WQ53_14225
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Entry
WQ53_14225 CDS
T04241
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQ53_14225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuw03019
]
WQ53_14225
03016 Transfer RNA biogenesis [BR:
psuw03016
]
WQ53_14225
Enzymes [BR:
psuw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WQ53_14225
Messenger RNA biogenesis [BR:
psuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WQ53_14225
Transfer RNA biogenesis [BR:
psuw03016
]
Prokaryotic type
tRNA degradation factors
WQ53_14225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_Vigilin
CRS1_YhbY
KH_5
Motif
Other DBs
NCBI-ProteinID:
AKC87741
UniProt:
A0A0E3UP48
LinkDB
All DBs
Position
3427158..3429263
Genome browser
AA seq
701 aa
AA seq
DB search
MAKITKTFQYGKHQVTLETGEVARQAGGAVVVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPLRPLFPEEFRNEVQVIATVMSLN
PEVDGDIPALIGASAAVALTGAPFNGPIGAAKVGYINGEYVLNPTVSELKTSKLELVVAG
TANAVLMVESEAAELSEEVMLGAVMFGHREMQKVIAVINELVAEAGKPKWDWQPPAKNEG
LIAALRHAVGDSLAGAFQVRDKLERRDTISSLKKAILGTLAPEAESNAWSPGELSKEFSE
QEYQTMRNSVLKTKVRIDGRALDEVRPITSKVSVLPRVHGSSLFTRGETQAIVAVTLGTA
RDGQVIDAVAGEYKDHFLFHYNFPPYSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPTME
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALSQAKAGRLHILGEMAN
ALTSPRQELSEFAPRLITIKIHPDKIREVIGKGGSVIQAITKETGTQIDIQDDGTITIAS
VNGAAGQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNDRV
EKVSDALKEGDLVKVKVLEVDKQGRIRLSIKAVEEGEDVAG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcaccaggtcaccctggaaaccggc
gaagtcgcccgccaggccggcggtgccgtcgtcgtcaagttcgatgacaccgtgctgctg
gtcaccgccgtggcggcgaagtcggcccgcgaagggcaggacttcttcccgctgacggtc
gactaccaggagaagttctacgccggcggccgcatcccgggtggcttcttcaagcgcgaa
ggtcgcgcgaccgagaaggagacgctgatctcccgcctgatcgatcgcccgctgcgtccg
ctgttcccggaagagttccgcaatgaagtgcaggtcatcgccacggtgatgtcgctgaac
ccggaagtcgacggcgacatcccggcgctgatcggtgcttccgccgccgtcgccctgacc
ggcgcgccgttcaacggcccgatcggtgccgccaaggtcggctacatcaacggcgaatac
gtgttgaacccgaccgtgagcgagctgaagacctccaagctggagctcgtcgtcgccggc
accgccaacgccgtgctgatggtggaatccgaagccgccgagctgtcggaagaggtgatg
ctgggcgcggtgatgttcggccatcgcgagatgcagaaggtcatcgcggtcatcaacgaa
ctggtcgccgaagccggcaagccgaagtgggactggcagccgccggccaagaacgaaggc
ctgatcgcagcgctgcgccacgccgtgggcgacagcctggccggcgctttccaagtgcgc
gacaagctggagcgccgcgacaccatctccagcctgaagaaggccatcctgggcacgctt
gcgccggaagccgaaagcaatgcctggagcccgggcgagctgtccaaggagttcagcgag
caggaataccagaccatgcgcaactcggtcctcaagaccaaggtccgcatcgatggccgt
gcgctggacgaagtgcgtccgatcacctccaaggtcagcgtgctgccgcgcgtgcacggc
tcttcgctgttcacccgcggtgaaacgcaggcgatcgtggccgtgaccctgggcaccgcg
cgcgatggccaggtcatcgacgccgtcgccggcgagtacaaggaccacttcctgttccac
tacaacttcccgccctattcggtgggcgaagccggccgcatgatgggcccgaagcgccgc
gagatcggccacggccgcctcgccaagcgcggcgtgctggcggtgatgccgaccatggaa
gccttcccgtacacgatccgcgtggtctcggaaatcaccgagtccaacggttcctcgtcg
atggcctcggtctgcggcagctcgctggcgctgatggatgccggcgtgccgatcaaggcg
ccggtggcgggcatcgcgatgggcctggtgaaggaaggcgacgacttcgtggtgctgtcg
gacatcctgggcgatgaagaccacctgggcgacatggacttcaaggtcgccggcaccgcc
gagggcgtgtccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcgctgtcgcaggcgaaggccggccgactgcacatcctcggcgagatggccaat
gcattgacgtcgccgcgccaggagctgagcgagttcgcgccgcgcctgatcaccatcaag
atccaccccgacaagatccgcgaagtgatcggcaagggcggttcggtgatccaggccatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcaccatcgcctcg
gtcaacggtgccgccggccaggccgccaaggcccgcatcgagcagatcacgtccgacgtc
gagccgggccggatctacgagggcaaggtcgccaagatcatggacttcggtgccttcgtc
accatcctgccgggcaaggacggcctggtccacgtgtcgcagatctccaacgaccgcgtc
gagaaggtcagcgacgcactgaaggaaggcgacctggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatcaaggccgtcgaggaaggcgaggacgtggcc
ggctga
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