Pseudoxanthomonas suwonensis J1: WQ53_14885
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Entry
WQ53_14885 CDS
T04241
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psuw
Pseudoxanthomonas suwonensis J1
Pathway
psuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WQ53_14885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psuw03019
]
WQ53_14885
03009 Ribosome biogenesis [BR:
psuw03009
]
WQ53_14885
Enzymes [BR:
psuw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WQ53_14885
Messenger RNA biogenesis [BR:
psuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WQ53_14885
Ribosome biogenesis [BR:
psuw03009
]
Prokaryotic type
rRNA processing factors
WQ53_14885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKC87853
UniProt:
A0A0E3Z360
LinkDB
All DBs
Position
complement(3579307..3582411)
Genome browser
AA seq
1034 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQSGVDPNKAGIRELLREGQEVVVQVDKDERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAELKRAMDALTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLAAWRAIAEAALSKPAPFLIYQESRLIIRALRDYLRADIGEILVDTEEMHQDAR
QFMEQVMPQTLRKLKHYKDDIPLFNRFQIESQIENAYERTIRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSSKHQRAVEDR
LQGALKYDRARVQLGRISRFGLMEMSRQRLRASLGESSQIVCPRCEGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANFLLNEKRGALREIEQRHDAPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPPPPAVTRVAPPRPAPVREE
REEAPAPVAAALAPRAPVAAPASGGVVGFFKRLFGGDNTPAAPAPERQPQSEGRGNRNDR
GRRDGRNEGGSAQQGNRGGQQQKQRGSQQGKGGGNAPPQQKQERQAQQKAAQAQGQPGNR
QQQKQPKPQKPETAETTKPAQQQAPAPRSEEAPRAPAAPAEVVAENVATAAVALPAAVVV
GDPTATAAEVTATTANVGGDTVPATEDGTAEGGSRRRRGRRGGRRRRRGGEAAGALAEAG
SETGTDLDDADDDEIGGEEPEVSADAATPAHAGQPEFDFDDLPAPAPQPVKAAPVAEAQE
LPAADPAPAHAAVDEMAAPAPAPLVSPAPVEQLAAAEPALAAAQAVAGEPVPAADPVEPA
AAAAIAAAEAPSVDAAPEVSAAEVTATETPATDVAATEAPVPDVVPETATVETAAAASDD
PMATASDAAPDAAPTPYPTTAGLFDQAPAAQETPAPAPQDAAAQVAEAEPTDDEAVEGHA
DTAAVEGSDQSRQA
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgttgatcaatgccacgcaggccgaagaactgcgcgtggccatcgtcgac
ggccagaccctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgaaccctccctcgaggcggccttcgtcgagtac
ggcgccgagcgccacggcttcctgccgctcaaggaaatctcccgcgactacttccagagc
ggcgtcgacccgaacaaggccggcatccgcgagctgctgcgcgagggccaggaagtggtg
gtccaggtcgacaaggacgagcgcggcaacaagggcgcggcgctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaactcgccgtcggccggcggcgtctcgcgc
cggatcgagggcgaagaccgcgccgagctcaagcgcgcgatggacgcgctgaccatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaggaactgcag
tgggacctggactacctgctggccgcctggcgcgcgatcgccgaggccgcgctgagcaag
ccggccccgttcctgatctaccaggagtcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgacaccgaagagatgcaccaggacgcacgc
cagttcatggaacaggtgatgccgcagaccctgcgcaagctcaagcattacaaggacgac
atcccgctcttcaaccgcttccagatcgagtcgcagatcgagaacgcctacgagcgcacc
atccgcctgccttccggcggcgcgctggtgatcgaccagaccgaggcgctgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttccacacc
aacctggaggcggccgaggaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcctcgtccaagcaccagcgcgcggtcgaggaccgc
ctgcagggcgcgctcaagtacgaccgcgcccgcgtgcagctgggccggatcagccgcttc
ggcctgatggagatgagccgccagcgcctgcgcgccagcctcggcgagtccagccagatc
gtatgcccgcgctgcgagggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaggagcacgcgatgaaggagaacaccgggcaggtgctggtccag
gccccggtggagatcgccaacttcctgctcaacgagaagcgcggtgcgctgcgcgagatc
gagcagcgccacgacgcgccgatcatcatcgtcgccgacgagcagctgcataccccgcac
tacgaggtcacccgcctgcgcgagaacgagctgggcgaggaaagcggcaagccgagctac
cagcgcggcaccccgcgcaagctgccggtgcacgcgctgaccaaggcccagctcaacatc
ccgccgccgccggcggtcacccgcgtggccccgccgcgcccggccccggtgcgcgaggaa
cgcgaggaggcgccggccccggtggccgccgcgctggcgccgcgcgcgccggtagcggcc
ccggcttccggtggcgtggtcggcttcttcaagcgcctgttcggcggcgacaacacgccc
gccgcgccggcaccggaacggcagccgcagagcgaaggtcgcggcaaccgcaacgaccgc
ggtcgccgcgacggccgcaatgaaggcggcagcgcccagcagggcaaccgcggcggccag
cagcagaagcagcgcggcagccagcagggcaagggtggcggcaacgccccgccgcagcag
aagcaggagcgccaggcgcagcagaaggccgcgcaggcgcagggccagcccggcaaccgc
cagcagcagaagcagccgaagccgcagaagcccgaaaccgccgaaaccaccaagcccgcg
caacagcaggcaccggctccgcgcagcgaggaagcgccgcgcgcgcctgcggcgccggcc
gaggtggtggccgagaacgtcgcgaccgccgccgtggcgctgccggctgccgtggtggtc
ggcgatccgaccgcgaccgcagccgaggtcaccgcgaccactgccaacgtgggcggcgac
accgtgcccgcgaccgaggacggcaccgcggaaggtggcagccgccgccgccgcggccgt
cgcggtggacgccgccgccgtcgtggcggcgaggccgcaggcgcgctggccgaagccggc
agcgagacggggaccgacctggacgacgccgacgacgacgagatcggcggcgaggagccg
gaggtgtccgcggacgctgcgacaccggcgcacgccggccagcccgagttcgatttcgac
gacctccctgctcccgcgccacagccggtgaaggctgcacctgtcgcggaagcgcaggaa
ctgccagcggccgatccggcgcccgcgcacgcggccgtcgacgagatggccgcgccggcg
ccggcgccgctggtctccccggcgcccgtcgagcagctggcggcagccgaacctgccctg
gccgccgctcaggccgtcgccggcgaaccggtaccggcggccgacccggtcgagccggcc
gctgcggctgccatcgcggccgcggaagcgccgtcggtggacgcggctccggaagtgagc
gctgctgaagtgaccgctactgaaacgcctgccaccgacgtggccgccacggaagcgccg
gtaccagacgtagtcccggagactgcgaccgtggaaacggcagccgctgccagcgacgat
ccgatggcgactgccagcgatgccgcgccggacgcggccccgacgccctatccgaccacg
gccggcctgttcgaccaggcgcctgccgcgcaggaaacgcccgcgcccgcaccgcaggat
gccgccgcccaggtggctgaggccgagccgacggacgatgaagccgtcgaaggccacgcc
gacacggcagcggtcgaaggctccgaccagagccgccaggcctga
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