Pseudoalteromonas sp. 13-15: ATS72_010135
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Entry
ATS72_010135 CDS
T11844
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psuz Pseudoalteromonas sp. 13-15
Pathway
psuz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psuz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATS72_010135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuz03021
]
ATS72_010135
03400 DNA repair and recombination proteins [BR:
psuz03400
]
ATS72_010135
Enzymes [BR:
psuz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATS72_010135
Transcription machinery [BR:
psuz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATS72_010135
DNA repair and recombination proteins [BR:
psuz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATS72_010135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AUL73931
LinkDB
All DBs
Position
1:complement(2187614..2191639)
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEEILDIFFDTTAFEVADGKVLMEL
VPSRLRGETAAFDIKGEDGEVLVESGRRVTARHIKSIEKKGITQLEVPHEYIIGRIISKN
YVDESTGEVIANANDELTLELMAELVKAGHTTIDTLYINEVDSGAYMSNTLNIDSSSNRL
EALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGYDSDTGPGTL
SKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCVA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLERARKLLVAAGFDENNLVSLNAEKLLTQSLAEEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERLEEMMKEQRELHE
LREFIKQAYEIGESRQVVDIASFSDDEIRRLAENLKGGLPIATPAFDGAKEDEIKDMLEL
GGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatataccttttttactgtctacacagttagaatcgtttaaaaaattcttagtg
ccggacgctgatggcgatcatggtttggaagctgccttccgttctgtgttccctataaaa
agctactcgggaaattctgagcttcaatacgtaagttaccgtattggtgagccagttttc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaactg
cgtcttgttgttatggacaaagaagctccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgaccgataccggtacctttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaactcattcatcaggtaaagtattatataacgcacgcgttattccttaccgtggt
tcatggttagacttcgaatttgatgcaaaagataacttatatgtacgtattgaccgccgt
cgtaaattaccggcgtctatcatcttacgtgcacttgagtactctagcgaagaaatccta
gatatcttcttcgatacaactgcgtttgaagtagctgacggtaaagttctaatggaactt
gtaccttcacgtttacgtggtgaaactgccgcttttgatatcaaaggcgaagacggtgaa
gtacttgttgaaagcggtcgtcgtgttacggctcgtcacatcaagagtatcgagaaaaaa
ggcattactcagttagaagtacctcatgagtacatcattggccgtattatttctaaaaac
tacgttgatgaatcaacgggtgaagttattgcaaacgcgaatgatgaattaactcttgag
cttatggctgaattagttaaagccggtcacactaccattgatacgttgtacatcaatgaa
gtggacagcggtgcttacatgtcaaatacattgaacattgactcttcaagcaaccgttta
gaagcactagtagaaatttatcgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttattccaaaacttgttcttctctgaagaacgttacgacctatcaactgtt
ggtcgtatgaagtttaatagccgtgttggttacgattctgacacaggcccaggcacatta
agcaaagaagacatcgtgtctgttatgaaagtattaattgctattcgtaacggtcaaggc
gatgttgatgatatcgaccacttaggcaaccgtcgtatacgtagtgttggcgaaatggct
gagaaccagttccgtgttggtctagtacgtgtagaacgtgctgtacgtgagcgtttaagc
ttaggtgaccttgacgcgataatgccacaagatcttattaacgctaagcctatttcggca
gcggttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataacccg
ctatcagaagtaacgcataagcgtcgtatttctgcattaggtccgggcggtctaacacgt
gagcgcgctggctttgaagtacgtgacgttcacgtaactcactacggtcgcgtatgtcca
atcgagactcctgagggtccaaacatcggtctaattaactcattgtctacgtacgcacgt
acaaatgactacggtttcttagaaacaccttaccgcaaagtggtagacggtgtagtaact
gatgaagttgattacttatcagccattgaagaaggtcagtttgttatcgcacaggcgaac
tcaaacttaactgaaaccaatgagtttgtagatgaacttattccatgtcgtcacaaaggt
gaatcaacctttatgggtcgcatggaccagcaatatatggatgtatcaccacaacaggtg
atctctgtagcagcagcacttatcccgttcctagaacacgatgatgctaaccgcgcattg
atgggttcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtacaggtattgagttaacactagcgaaagattctggtgtaacgattgttgcaaaacgt
ggtggtgaagtaatgtatgccgacgcaagtcgcatcgttgtaaacgtacatgaagaagaa
cgcatccctggtgaagcgggtatcgacatatacaacttaaccaagtacacacgttctaac
caaaatacatgtattaaccaaaaaccaacgtgcatggttggtgaaccggttactcgtggt
gacgtgttagcagatggtccttcgactgacttaggtgacttagcccttggtcaaaacctt
cgcgtggcattcatgccatggaacggttataacttcgaggattcaatcttactatcagag
cgcgtagttgaagaagatcgtttaacgactatccacattcaagaactacagtgtgttgcc
cgtgatactaaattaggtccagaagagatcactgcagatatccctaacgtgggtgagtct
gcactaggcaagcttgatgaatcaggcgttgtttatattggtgctgaagttaaaggcggc
gatattctagtaggtaaagtgactccgaaaggcgaaacacagcttacacctgaagagaag
ctactgcgtgctatcttcggcgaaaaagcatctgacgttaaagacagctctttacgtgta
ccaaactctgtaactggtacagtaattgacgtgcaagttttcacccgtgacggtgttgaa
aaagataagcgtgcgttagaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtattcttgaagctggcgttttagaacgcgctcgtaagctacttgta
gctgcaggctttgatgaaaacaacttagtgtcattaaatgctgagaaactattaactcaa
agccttgctgaagaagataagcaagctgaacttgagcaactagctgcacagtacgatgaa
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaattactcaaggtgat
gacttagcaccaggcgtacttaaaattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccatacgatgataaaggtcgtacggtagatatcgtactaaatcca
ctaggtgtaccatcgcgtatgaacatcggtcagatccttgaaacacatatgggtcttgct
gcacgtggtatcggtgaacgtttagaagaaatgatgaaagagcaacgtgagcttcatgag
ctacgtgaattcatcaagcaagcttacgaaattggtgaatctcgccaagttgtagacatt
gcaagtttctctgatgacgaaattcgtcgcctagctgaaaacttaaaaggtggtttacca
atcgctactcctgcatttgatggcgctaaagaagacgaaatcaaagacatgctagagctt
ggtggataccctagaagtggtcaggttacactttatgatggccgtactggcgatcagttt
gaacgtcaagtaactgttggttacatgtacatgcttaaacttaaccacttggttgatgat
aagatgcacgcacgttctactggttcttacagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcacttgaagcttat
ggtgctgcttacactctacaagaaatgctaacagtgaaatcggatgacgtgaatggtcgt
actaagatgtataaaaacatcgttgatggtaaccacaagatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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