Pseudoalteromonas sp. 13-15: ATS72_010810
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Entry
ATS72_010810 CDS
T11844
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psuz Pseudoalteromonas sp. 13-15
Pathway
psuz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psuz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATS72_010810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psuz03021
]
ATS72_010810
03019 Messenger RNA biogenesis [BR:
psuz03019
]
ATS72_010810
Transcription machinery [BR:
psuz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ATS72_010810
Messenger RNA biogenesis [BR:
psuz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ATS72_010810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
OB_RNB
Fungal_virus_P2_C
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AUL74053
LinkDB
All DBs
Position
1:2327621..2328949
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AA seq
442 aa
AA seq
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MQPTSLNDQSDFEYDNCNKEPTNMHLRELKDKSIKELVNLAESMGLENVARLRKQDIIFT
ILKSHAKGGENIFGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSI
SGLIRPPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERFRMERGNGSKEDI
TARVLDLASPIGRGQRGLLVAPPKAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVT
EMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV
IPSSGKVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKG
TGNMELHLNRKIAERRVFPAIDFNRSGTRREELLTKPDELQKLWILRKIVHEMSEIDAME
FLIDKLSMSKTNDEFFDSMKRQ
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
attcaaccaacctcactcaacgatcaaagcgactttgagtatgacaattgtaataaagaa
cccaccaatatgcatttacgcgaattaaaagacaagtctataaaagaacttgtaaactta
gctgagtccatggggctcgaaaacgtagcccgcttaagaaagcaagatatcatttttacc
atattaaaatcccatgccaaaggcggagaaaatatcttcggcggtggtgtgcttgagatt
ttgcaagatggttttggctttttaagatcatcagaagcttcttacttagctggcccagat
gacatttatgtatcaccgagccaaattcgccgcttcagtatgcgtactggcgactcaatt
tcaggccttattcgtccaccaaaagatggtgaacgttactttgcattacttaaagtaaac
gaagttaactttgataaacctgaaaattctcgcaccaaaattctttttgaaaacttaact
ccattacatgcaaacgaacgtttccgcatggaacgtggtaacggtagtaaagaagatatc
actgctcgtgtacttgatttagcatcaccaattggccgtggccaacgtggtttattagta
gcaccgccaaaagcgggtaaaacaatgctactgcaaaacattgcacaatcaattacgcat
aatcatcctgatgtaacgttaatggttttactaattgacgaacgtcctgaggaagtaact
gaaatgcaacgccttgttaaaggtgaagttattgcatcaacgtttgatgagcctgcatct
cgtcacgtacaagttgccgaaatggttatcgaaaaagcaaaacgtttagttgagcataaa
aaagacgttgttattttacttgattcaatcacgcgtttagcacgtgcttacaacaccgtt
attccttcatcaggtaaagtacttaccggtggtgttgacgctaatgcactacacaaacct
aagcgtttcttcggtgccgcacgtaacgttgaagaaggtggtagcttaacaattatagcc
actgcacttatcgatactggctctaaaatggatgaagttatctacgaagaatttaaaggt
actggtaacatggaattacatctaaaccgcaaaattgcggaaagacgtgtattcccagct
atcgactttaaccgctctggtactcgccgtgaagaactacttactaagccagatgagctg
caaaagctatggattttacgtaaaatcgttcatgaaatgtcagagattgacgccatggaa
tttttaatcgataaactatcaatgagtaaaaccaatgatgagttttttgattcgatgaaa
cgccaataa
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