Pseudomonas sp. VLB120: PVLB_01335
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Entry
PVLB_01335 CDS
T02897
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_01335
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PVLB_01335
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
NUDIX_2
Motif
Other DBs
NCBI-ProteinID:
AGZ33076
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All DBs
Position
308571..309050
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AA seq
159 aa
AA seq
DB search
MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPDETPEDALYRELNEEVGL
ERDDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLLRLVSNEQRVRMDLTGKPE
FDGWRWVSYWYPLGQVVTFKREVYRRALKELAPRLLTRD
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacccggatggttttcgccctaacgtcgggatcattctcacgaatgatgccggg
caggtgctatgggctcggcggatcaaccaggatgcctggcaatttccccagggcggtatc
aaccctgatgaaacgccggaagatgccctgtaccgcgagctgaacgaagaagttggcctt
gaacgcgacgatgtggaaattcttgcctgcacccgtggctggttgcgttatcgtttaccc
caacgcctggtacgtacccacagccagccgttgtgtatcggccagaagcagaagtggttc
ctgctgcgcctggtgagtaacgaacagcgggtgcggatggacctgaccggcaagccagag
ttcgacggctggcgctgggtcagttattggtacccgctgggccaggtggtgacattcaag
cgcgaggtctaccgacgcgccctgaaagagctagcaccgcgtctgctgacgcgcgactga
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