Pseudomonas sp. VLB120: PVLB_02280
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Entry
PVLB_02280 CDS
T02897
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_02280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_02280
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVLB_02280
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVLB_02280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGZ33265
LinkDB
All DBs
Position
complement(525220..527121)
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AA seq
633 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLSLVSACIFGGVGMN
PQIQAMAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQKIPDGDLMGFDASKVEAEKPETRERQQHNGRGGRNQQARGEAGQEGSGGR
KDKGKDKGKAKQQAADKPADKEKSGERQQQQRKQRDKKPRQQQASTNAVPKVPADRDPEE
FLDDEIDNFGNRADYVSPYQNAKNQGRNRRPGAAGQGQQQGQGQRSNGGSQGQGRNGGQQ
RGASGEKRPPRNNNGGGGGGARRDGNAGGRNRSAGRSDNTRQEPAVRSPREPQHQPVIIR
KESKLDRYPTPEQLEELPSRPRGERPALLTRNR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggcagcgggc
tacacccagccgactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcccagacaggtactggcaaaactggcggttttgccctgccgatcctc
gagcgcctgttcccgggtggccaccccgacaaatcgcaacgccatggcccacgccagcct
cgcgtgctggttctgacgccaacccgcgaattggcggcccaggtccatgacagcttcaag
gtctatgcccgtgacctttccctggtcagcgcctgcatcttcggtggcgtcggcatgaac
ccgcagattcaggccatggccaagggcgtcgatgtcctggtcgcctgcccgggtcgcttg
ctggacttggcaggccaaggcagtgtcgatctatcccatgtggaaatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtgaagaaagtccttgcccgc
ctgccggccaagcgccagaacctgctgttctcggctaccttctccaaggacatcaccgac
ctggccgataagctcctgcacaacccggagcgtatcgaggtcacaccaccgaataccacg
gtcgagcgaatcgaacagcgcgtctaccgtctgcccgccagccacaagcgcgcactgctg
gctcacctgatcaccctcggcgcctgggaacaagtgctggtcttcacccgtaccaagcat
ggcgccaaccgcctggccgaatacctggaaaagcacggcctcaccgccgcggcgatccat
ggcaacaagagccagaacgcccgcaccaaggcattggctgacttcaaggccaacagtgtt
cgcgtactggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccat
gtggtcaacttcgagctgcccaatgtcgaggaagactacgtccaccgtatcggccgcacc
ggccgcgccggacgttcgggcgaagcgatctcgatggtcgctcctgatgaagagaagctg
ctcaagagcattgagcgcgtcaccaagcagaagatcccggacggcgacctgatgggcttc
gatgccagcaaggtcgaagccgagaagccagaaacccgtgagcgtcagcagcacaatggc
cgtggtggtcgcaaccagcaggcccgtggcgaagcaggccaggaaggcagtggcggacgc
aaggacaagggaaaggacaaaggcaaggccaagcaacaggccgccgacaaacccgctgac
aaggagaagtccggcgagcgccagcaacagcagcgcaagcaacgcgacaagaagcctcgc
cagcagcaggccagcaccaacgctgtgccgaaagtacctgccgaccgtgatccagaagag
ttcctggatgacgagatcgacaacttcggtaaccgtgccgactacgtcagcccctaccaa
aacgccaagaaccagggccgcaaccgtcgcccaggcgccgcaggccagggtcaacagcaa
ggtcagggacagcgcagcaacggcggcagccagggccaaggccgaaatggcggccagcaa
cgcggcgccagcggcgagaaacgcccgccccgcaacaacaatggcggtggaggtggcggt
gcgcgccgtgatggtaacgcgggtggtcgtaaccgctcggccggtcgcagcgacaacaca
cggcaggaaccggcagtgcgtagtccgcgcgaaccgcagcatcagccggtgatcatccgc
aaggaatccaagctcgaccgctacccaacgccggaacaactggaagagctgccgagccgg
ccgcgtggtgagcgccctgcgctgctgacccgcaatcgctga
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integrated database retrieval system
