Pseudomonas sp. VLB120: PVLB_03725
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Entry
PVLB_03725 CDS
T02897
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PVLB_03725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_03725
Enzymes [BR:
psv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PVLB_03725
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PVLB_03725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AGZ33552
UniProt:
A0AAN0QZE9
LinkDB
All DBs
Position
856862..860341
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AA seq
1159 aa
AA seq
DB search
MANSTPLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPQDDDQGGCGIAAAIDVQLPGSFMWQLYRAILGREEIPEVSLLDKAPLTWRLMRLLPAL
IERPHFEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWAAGEHVLNTARGE
RKPLAPGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINQLQDAPAGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDESLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYRGVFSDGRIDLFSDGAPTTLLNQL
QDDILELRPLAETRERWPQVDPGKDRSVRFHVAHSPQREVEILHDQLLARFSADPTLRPR
DVIVMLPAIDTYAPHIRAVFGQLQRNDPRYIPYTLTDQGQRGRDPLLIALEYLLKLPDSR
FAVSEVLDLLDVPTVRARFGIRESDLPTLHRWIEGAGIRWGLSAEQRASLGLPEGLEQNS
WRFGLRRMLLGYAVGVGESCDGIEPYDEIGGLDAALIGPLVALLEALDVACEALRQPATA
AQWGERLHALLQVFFLAEEEHDEFLLMQLQELRDSWLEVCETVGLQDLLPLTVVREAWLS
GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRP
GDRSRREDDRYLLLEAVLSAQDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWRLLG
AQDGEQQDPGQQLLHALTQEHPLQPFSWRYFQKGSALFSYAHEWQVLHQAVEQVPLSDAL
APYDNEEALTLMQLQDFLRHPVRHFFSQRLKVFFEALEAPTPDEEPFVLDTLQRYSASES
LLGAALADPDHAEQALHAQARRLQACGALPLAGFGELLQADLVEPLPDLLQRHRQLLQRW
PTLVEGALPIHFEQGKHRLEGWLGRVYQADDQSLLSVTTVPNTISAGRNNFKWHRLTASW
VMHLAACAAGYPLNSAVVASDLTLLLPPLPQADAANLLGHLLVARQAAMNAPLPVAAKTA
FAWLAQEDPEKALAAAERAYEGDGRTSFGERSESLALARQFRDFAALMADETFEGWCETL
YRPLFTAPWQTLGNPESGA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctaacagcaccccacttcatcccggcttcatgatcgtccacggcaaccgactggat
gacctgcgaagcctggtggtgagctggatgcggcgctacccgctggcgccactggaaaac
gaaatcgccctcgtgcaaagcaacggcatcgcgcagtggctcaagctggccctggctgag
gacccgcaggacgacgatcaaggaggttgtggcatcgcggccgccattgacgtgcaacta
cctggcagtttcatgtggcagttgtaccgggccatactggggcgcgaagaaatccccgag
gtatccctgctcgacaaggccccgctgacctggcgcctgatgcgcttgcttcccgccttg
atcgaacgtccccatttcgagccgctgcgccgtttcctcaccgacgacagcgacctgcgt
aagcgttatcagttggcggaacgccttgccgacctgttcgaccaataccaggtctaccgc
gccgattggctgaaggactgggctgccggtgagcatgtactcaacaccgcccgtggcgaa
cgcaaaccgttggcccccggtaatcgttggcaagccgagctgtggcgagcgctgttggaa
gatgtcggcgagcaaggcatggcccagagccgtgccggagtgcaccaacgcttcatcgag
cgtatcaaccaacttcaagacgcaccggcgggcctgccttcacgggtaatcgtgttcggt
atctcgtccttgcctgcccaggcactggaggcgttggccggcctggcccgtttcagtcag
gtcttgctttgtgtgcacaacccatgtcgtcaccactgggccgatatcgtcgccgacaag
gacctgctgcgtcatcagtacaagcgccagcagcgcaagcagggcatgcccttgcaactg
gatgatgaatcgctgcatcagcatgcccatcccctgcttgccgcttggggcaagcagggc
cgcgactacatcaacctgctcgacagctacgacgaccctggcagctaccggggcgtgttc
agcgatgggcgtatcgacctgttcagcgacggcgcgcccactacattgctcaaccagttg
caagacgacattctcgaacttcgtccgctcgcggaaacccgcgagcggtggccacaagtc
gaccctggcaaggatcgttcggtgcgtttccacgtggcccatagcccccagcgtgaggtc
gagatcctccatgaccagttgcttgcccggttcagcgccgaccctaccctgaggccacgt
gacgtcatcgtcatgctcccggcaatcgacacctatgccccgcacattcgcgctgtgttc
ggtcaactgcagcgtaacgatccccgctacatcccctacaccctcaccgatcaggggcag
cgtggtcgtgacccactgctgatcgccctcgagtacctgctcaagctccccgacagccgc
ttcgccgtcagtgaagtactcgatctgttggatgtcccgaccgttcgcgcccgtttcggc
atccgtgagagcgacctgccgacactgcatcgctggatcgagggtgccggtattcgttgg
ggtttgagtgccgagcaaagggcctcgctggggttgccggaaggcctggagcagaacagc
tggcgatttggtttgcgccgcatgctgctgggctatgccgtcggcgtgggtgagagctgc
gacggcatcgagccctacgatgagatcggcggcctcgacgctgccttgatcggcccattg
gtggcgctgctggaggccttggacgtggcctgcgaagccttgcgccaacccgctaccgcc
gcgcagtggggcgagcgtctgcacgcgctgttgcaggtattcttcctggcagaggaagaa
cacgatgaattcctcttgatgcaattgcaggagctgcgcgacagctggctcgaagtctgc
gaaaccgtggggctgcaggatttgctgccgcttaccgtcgtgcgcgaggcctggctgtcg
ggtctcgaccagggcaagctgtctcagcgttttctcgccgggtcggtgaacttctgcacc
ttgatgcccatgcgcgccattcctttccgtgtagtctgtctgctgggcatgaacgatggc
gattacccgcgcgcccagccacccctggacttcgacctgatggccagcgattaccgtcca
ggtgaccgctcccgccgtgaagacgaccgctacctactgctcgaagccgtgctttcggct
caggaccagctgtatgtcagttgggtcggtcgcagcattcgcgacaacagcgagcggcca
gcctcggtgttgattggccagttgcgtgaccaccttgcggccggttggcgcctgctcggt
gcccaggatggcgaacagcaagaccccggccagcaactgttgcatgccctgacccaggag
catccattgcagccgttcagctggcgttatttccagaagggcagtgcattgttcagctat
gcccatgagtggcaggtgctgcatcaggcagtcgaacaggtgccactcagcgacgcactg
gcgccctatgacaatgaggaggccctgacgctgatgcaactgcaggacttcttgcgtcac
ccggtccggcatttcttcagccaacggttgaaagtgtttttcgaggcgttggaagcacca
accccagatgaggaaccgttcgtgctcgacaccctgcaacgctacagcgccagcgaaagc
ttgctgggcgccgcgctggccgatcccgaccacgccgagcaggccttgcacgcccaggcc
cgtcgtctgcaggcctgtggggcgctgcctctggcgggcttcggtgaactgctgcaggcc
gacttggtcgagcccttgcctgatcttttgcaacgtcaccgacaactgttgcaacgctgg
ccaaccttggttgagggggcgctaccaattcatttcgagcagggtaagcatcgcctcgag
ggttggttgggacgcgtctaccaggccgatgaccagagcctacttagcgtcaccacggta
cccaataccatcagtgccgggcgcaacaacttcaagtggcaccgcctcacggcaagctgg
gtgatgcacctggcagcctgcgctgccggttatccgctcaacagtgccgtggtggccagt
gacctgaccctgctgctgccgcccctgccacaggcggatgccgccaatctgcttggccac
ctgctcgtggcacgccaggcggcgatgaacgcaccgctgccggtggccgctaagacagcg
ttcgcctggctcgcccaggaagacccggagaaggccctggccgccgctgagcgtgcctat
gaaggggatggccgaaccagctttggcgaacgcagcgaaagcctcgccctggcgcgccag
ttccgcgactttgccgcactcatggccgacgagaccttcgagggctggtgcgagaccctg
taccgaccgttatttaccgcaccctggcaaaccctgggtaacccggagagtggcgcatga
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