Pseudomonas sp. VLB120: PVLB_04520
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Entry
PVLB_04520 CDS
T02897
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv00470
D-Amino acid metabolism
psv00550
Peptidoglycan biosynthesis
psv01100
Metabolic pathways
psv01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PVLB_04520 (ddl)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PVLB_04520 (ddl)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
PVLB_04520 (ddl)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psv01011
]
PVLB_04520 (ddl)
Enzymes [BR:
psv01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
PVLB_04520 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:
psv01011
]
Precursor biosynthesis
Amino acid ligase
PVLB_04520 (ddl)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp
ATP-grasp_3
RimK
ATPgrasp_YheCD
ATP-grasp_5
TTL
GARS_A
ATPgrasp_Ter
Motif
Other DBs
NCBI-ProteinID:
AGZ33711
UniProt:
A0AA86AAQ5
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All DBs
Position
1028792..1029748
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AA seq
318 aa
AA seq
DB search
MTSAYDKLHSTLDVKAFGRVAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVGIDVGDD
LLARLQSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQ
SLGIPTPRHAVLASESDCVAAGAELGFPLIVKPAHEGSSIGMAKVNSVQELVAAWKDAAK
YDSQVLVEQWIHGPEFTIAVLRGQVLPPIALGTPHVFYDYDAKYIANDTQYRIPCGLDSA
KEKELIDLTARACDAIGIEGWGRLDVMQDEQGRFWLLEVNTAPGMTDHSLVPMAARAAGL
DFQQLVLAILAESVVTRG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcgcctacgacaagctgcattccaccctcgacgtcaaggcattcggtcgtgtc
gccgtgctgtacggcggcaagagcgccgagcgcgaggtgtcgctgaagtctggcgccgcc
gtgatcgatgcgctgaccactgccggtgtggacgtggtaggcatcgatgtgggtgatgac
ctgctggcccgcctgcagagcgagaagatcgaccgcgccttcatcattctccacggccgt
ggcggtgaagacggcagcatgcaaggcctgctcgagtgcctgggcatcccttacaccggt
agcgggatcctggcgtctgccctggccatggacaagctgcgcaccaagcaggtgtggcag
agcctgggcattccgaccccgcgccacgccgtgctggccagcgagagcgattgtgttgcc
gccggtgcggaactgggcttcccgttgatcgtcaaaccggcccatgaaggttcaagtatc
ggcatggcgaaggtgaacagcgtgcaagagctggtcgccgcctggaaggacgccgccaag
tacgattcgcaagttctggtcgagcaatggattcacggcccggagttcaccatcgcagtg
ttgcgcggccaggtgctgcctccgattgcgctgggcaccccgcacgtgttctacgactac
gacgccaagtacattgccaatgacacccagtaccgcattccgtgcggcctggacagtgcc
aaggaaaaggaactgatcgacctgaccgcgcgcgcctgcgatgccatcggcatcgaaggc
tgggggcggctggacgtgatgcaggacgagcagggccggttctggctgctcgaagtcaac
accgcacccggcatgaccgaccatagcctggtgcccatggcggcgcgcgcggccggcctg
gacttccagcaactggtgctggcgatcctggctgaaagcgtcgtgacgcgaggttaa
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