Pseudomonas sp. VLB120: PVLB_04835
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Entry
PVLB_04835 CDS
T02897
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PVLB_04835 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_04835 (sbcB)
Enzymes [BR:
psv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PVLB_04835 (sbcB)
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PVLB_04835 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PVLB_04835 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PVLB_04835 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGZ33774
UniProt:
A0AAN0QZR3
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All DBs
Position
1095502..1096938
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AA seq
478 aa
AA seq
DB search
MSSSIFWHDYETTGINPRCDRPLQVAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLV
TGITPEQLATQGLCEAEFMTRVHEQLARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQEGRTSLRLELLSQANGIVHGHAHEALSDV
RATIGLARLIRQKQPKLYDWLFNLRSKHKVLEQIRLLQPLVHISGRFSAARHYLGVVLPL
AWHPRNRNALIVCDLHQETLPLLRESAEVLRARLYTRHEHLSEGQLPVPLKLVQINRCPV
VAPLSVLRPADQQRLGLDMALLQSRGEALATQQSVWQDKLEHIYGTEDFTPSEDPEQQLY
DGFLGERDRRLCEQVRTLEPAQLGHGHWMFDDPRMPELLFRYRARNFPETLNPQERQRWF
AFCQQRLSDPLHGAPNTLAGFEQARQGAWADADEAGRKVLDAWQAHAGQLQARFELHP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccagcattttctggcacgactacgaaaccaccggcatcaacccacgctgcgac
cgaccgctgcaggttgccggtgtgcgcaccgacctcgatctgaatgagatcgaagcgcct
atcaacctctattgccgcccctccgacgacatcctgccgcacccggccgcgtgcctggta
accggtatcacgcccgaacagttggcgacccagggcctatgcgaagccgaattcatgacc
cgggttcacgagcagcttgcgcgcccgggaacctgtggcgcgggctacaacaccttgcgt
ttcgatgacgaggtcacgcgttacagcctgtatcgcaacttcttcgacccctatgcccgt
gagtggcagggcggtaacagtcgttgggacctgatcgacgtcgtgcgcacggcttacgcg
ctacgccctgagggcatcgtctggccccagcaggagggccgtaccagcttgcgcctggag
ttgctcagccaggccaatggcattgtccatgggcatgcccatgaagcactttccgacgtg
cgggcgaccattgggttggcccgtctgattcgccagaaacaacctaagttgtatgactgg
ttgttcaaccttcgcagtaagcacaaagtgctggaacagattcgcttgttgcagccgctg
gtgcacatatcaggacgtttctcggccgcgcgtcattatctgggcgtggtgttgccactg
gcctggcacccgcgcaatcgcaatgcactgattgtgtgcgacctgcatcaggaaacccta
ccgttattaagggaaagtgccgaagtcctgcgagcgcgcttgtacactcggcatgaacat
ttatctgaggggcaactaccggtaccgctgaagttggtgcaaatcaaccgctgcccggta
gtggctccgctatcggtattgcgccctgcagatcaacaacgccttgggctggacatggca
ttgttgcaatcgcgcggtgaggccttggccacgcaacagtcggtttggcaagacaagctt
gaacacatctatggcacggaagatttcacccccagcgaagaccctgaacagcagttgtat
gacggtttcctgggagagcgtgaccgtcgtctatgtgaacaagtgcgtaccctggaacca
gcgcaattagggcatggccactggatgttcgatgacccacgaatgcctgagttgctgttc
cggtatcgtgcgcgaaacttccccgagaccttgaacccccaggagcgtcagcgctggttc
gcgttctgccagcagcgtttgagcgaccctttgcacggcgccccgaacacgctggcgggc
ttcgagcaggcccggcagggggcttgggccgatgccgatgaagcggggcgcaaggtgctg
gacgcctggcaggcccatgccgggcaattacaggcacggttcgaattgcacccgtga
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