Pseudomonas sp. VLB120: PVLB_05300 Help Entry PVLB_05300        CDS       T02897                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism psv  Pseudomonas sp. VLB120 Brite KEGG Orthology (KO) [BR:psv00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:psv03400]     PVLB_05300 Enzymes [BR:psv01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      PVLB_05300     5.6.2.6  RNA 3'-5' helicase      PVLB_05300 DNA repair and recombination proteins [BR:psv03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     PVLB_05300 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc DEAD WHD_4th_Lhr WHD_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 WHD_DprA Fe_dep_repress LexA_DNA_bind DUF5805 WHD WHD_2nd_Lhr Motif Other DBs NCBI-ProteinID:  AGZ33867 LinkDB All DBs Position complement(1205068..1209432) Genome browser AA seq 1454 aa AA seqDB search MGRYSLQKINDERPLANPTLTLHNQHMNLPAHQHPVLKLFHPAVGTWFRRRFATITDAQA QAWPLIHAGRSMLLAAPTGSGKTLSAFLAVLDELFRDGLDRDGALPAHTQIVYVSPLKAL SNDIQLNLQAPLEGIAKVLEEQGLKAPRITTAVRTGDTPQKERTAMRKLAPHILVTTPES LYVLMGSASGRAGLASVHTVIVDEIHALADNKRGSHLALTLERLEALAGRPLRRIGLSAT QRPVERVAQFLVGHGRPCAIVDVGHVRQRDLALEVPPVPLEAVMSTDAWGLVYDRLAKLA REHRTTLIFVNTRRLAERLTRHLGERLGNDAVAAHHGSLAKEYRLAAEQRLKAGDLQVLV ATASLELGIDIGDVDLVCQIASPGSIAAFLQRVGRSGHQVDGVPKGRLFPTSRDELIECV ALLDGVRRGDLDELRVPKAPLDVLAQQIVAEVSNQPWAESALFDMLRKATPYAELDEGHY QALLRMLADGYNGRQGVRSAYLHRDAVSGTVRGRRGSQLTALTSGGTIPETADYAVLLEP QALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPG RSDELSAAVARLQARVDERLAMSGGDFPPVLQWLQSTFELDEACASQLLDYLGRTRQVLG ALPSQQTLVMERFFDESGGTQLIIHAPYGSRINRAWGLALRKRFCRTFNFELQAAASEDA IVLSLSTSHSFELDDVWRYLSSRSAEHMLVQALLDAPLFGVRWRWTASVALALPRFVGGR KVAPQIQRMKSEDLIASVFPDQIACLENIVGERQIPDHPLVEQTLDDCLHEAMDSEGWLA LLRRIESGEVRLLSRDLPTPSPLASAILNARPYAFLDDAPLEERRTQAVLNRRWNAVNSR DDLGALDADAIVSVQDEAWPRPGNADEMHEALMSLGAIGQEEVQANPSWDLLLRQLAKAG RAMRLTAAKLWLARERLSLLRALYPASPLEPALDVLPGFDQGIDPDNALSELLRARLSGY GPQTVAQIAAPLGQRPVDVEQALARLEREGYVLRGHFTPGVDEPQWCERHLLARIHRYTV KRLRREIEPVSLQDFMRFLFDWQHLAADERLRGPQAVAHVLAQLQGFPSAAGAWEAELLP ARIKDYSPHWLDDACRSGQFAWSRLATTTASNTLSSTPLVLLPREHMNLWRSLAPEPAAQ ALGGRAQRVLEALRAQGALFFDELVVEAHLLPSELEAALQELVGAGLVSADSFTGLRSLI TPAAKRASRNSRRGHSPLSSSMAHAGRWALLRRGSGPVDEGQRTEHVARALLRRYGVICW RLLERESDVLPPWRELLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAIGLLRQVRRRAL DGSLIVISASDPLNLIGTLLPGVKVPAVAGNRLLYRDGVPVAARVAGRYSYLVEGVAGEQ AVWKQKLLRDMGGG NT seq 4365 nt NT seq  +upstreamnt  +downstreamnt ttggggcgctacagtctacagaagatcaacgacgaacggccccttgccaacccgacgcta accctccataaccaacacatgaacctgccagcccaccagcacccggtgctcaagctgttc catcccgccgtcggcacctggttccgccgccgtttcgccacgatcaccgatgcccaggct caagcctggccgctgattcatgccggacggtcgatgttgctcgccgcaccgaccggctcg ggcaagaccttgagtgccttcctggccgtactcgacgagctttttcgcgacggccttgac cgagatggcgcgctgcccgctcacacccagatcgtctacgtctcgccactcaaggccctg tccaatgacatccagctgaacctgcaggcaccgctcgaaggcatcgccaaagtcctggaa gagcaaggcctgaaggcaccgcgtatcaccaccgccgtgcgcaccggcgataccccgcag aaagaacgcaccgccatgcgcaagctggcgccgcacattctggtgaccacacccgagtcg ctgtacgttctgatgggctcggcctcgggccgcgcaggcctggccagtgtgcacacggtg atcgtcgatgaaatccacgccttggccgacaacaagcgcggcagccacctggcattgacg ttggagcgactggaggcgctggccgggcgaccgctgcggcggatcggcttgtcggcgacc cagcgaccggtcgagcgggtggcgcagtttctggtcgggcatgggcgcccctgtgcgatc gtcgatgtcggccacgtacgccagcgtgacctggcactggaggtaccaccggttcccctg gaggcggtgatgtccaccgatgcctggggcctggtctacgatcgtctcgccaaactggcc cgcgaacaccgcaccacgctgatcttcgtcaacacacggcgcctggccgagcgcctgacc cgtcacctcggcgagcgcctgggcaacgatgcggtggccgcgcaccacggtagcctggcc aaggagtatcgcctggccgccgaacaacggctcaaggccggcgatctgcaagtgctggtg gccaccgcctcgctggagctgggcatcgacatcggcgacgtcgatctggtgtgccagatc gcctcacccggctcgatcgccgccttcctgcagcgcgtcggccgatccgggcaccaggtc gatggcgtgcccaaggggcggctgtttcccacgtcacgggacgagctgatcgagtgcgtg gccctgctcgacggcgtgcgccggggagacctggatgaactgcgagtccccaaagcgccc ctggacgtactcgcccagcagatcgtcgcggaagtgagcaaccagccctgggcggagtcc gcgctgttcgacatgctgcgcaaagccacgccctacgccgaactcgacgagggccattac caagcactgttgcgcatgctcgccgatggctacaacggccgacagggcgtgcgcagcgcc tatctgcaccgcgacgcggtcagtggcacggtgcgcgggcgccggggcagccagctcacc gcgctgaccagtggcggcaccatccccgaaaccgccgactatgcggtgctgctcgaacct caggcgctgaacatcggtagcgtcaacgaagacttcgccgtcgagagcatcgctggcgac atcttccagttaggcaatgcctcttaccgcattctgcgggtcgaacctgggcgagtacgt gtcgaagacgcccatggcctgccaccgaccattccattctggctcggcgaggcgccgggc cgcagcgatgagttgtctgccgcggttgcccgcctgcaagcccgggtcgacgaacgcctg gcaatgagtggtggcgatttcccgccagtgctgcaatggctgcagtccaccttcgaactg gacgaagcctgcgccagccagctactcgactacctgggccgtacccgtcaggtgctgggc gccctgccttcgcagcagaccctggtgatggagcgtttcttcgacgagtcgggcggcacc caattgatcatccacgcgccttacgggagccggatcaaccgcgcctggggcctggccctg cgcaagcgtttctgccgcaccttcaatttcgagttgcaggcagcggccagcgaagacgct atcgtgctgtcgctgtccaccagccacagcttcgagctcgacgacgtatggcgttacctg tccagccgcagcgccgaacacatgctggtccaggctttgctcgatgcccctttattcggc gtgcgctggcgctggacagcatcggtggccctggccctgccgcgctttgtcggcggccgc aaagtagcccctcagatccagcggatgaaaagtgaagacctgattgcctcggtgtttccc gaccagatcgcttgcctggagaacatcgtcggcgagcggcagatacccgatcacccgctg gtagagcaaaccctcgacgattgcctgcatgaggccatggacagcgaaggttggttggcc ttgctgcgacgcatcgaaagcggcgaggtacgcttgctcagccgtgacctgccgaccccc tcgccgctggcctcggcgattctcaatgccaggccgtatgccttcctcgacgatgccccg ctggaagagcggcgcacccaggcggtgctcaaccggcgctggaacgcggtgaacagccgc gatgacctcggcgcgctggacgccgatgcgatcgtcagcgtacaggacgaggcatggcca cgaccgggcaatgccgacgagatgcatgaagccttgatgagcctgggcgccatcggccag gaagaggtccaggccaaccccagctgggatttgctgctgcgccagctcgccaaggccgga cgagccatgcgcctgaccgcagcgaaactctggctggcgcgtgagcgcctgagcctgttg cgggcgctctatccggcatcccccctggagccggcgctggacgtgctgccgggcttcgac cagggcatcgacccggacaacgcattgagcgagctgctacgtgcccgcctgagtggctac gggcctcagaccgtggcccagatcgccgcgccgctgggccagcgccctgttgacgtcgag caggcgctagcccgcctggaaagagagggctacgtattgcgcggccacttcactcctggg gtggacgaaccgcagtggtgtgagcggcacctgcttgcgcgcatccatcgttacacggtc aaacgcctgcgtcgggagatcgagccggtcagtttgcaggacttcatgcgttttctgttc gactggcagcacctggcagcggatgaacgcctgcgcggcccgcaggccgtggcccatgtg ctggcccaactgcaaggtttccccagcgctgccggggcatgggaagcagagctgctacct gcacggatcaaggattacagcccgcactggctcgacgatgcctgtcgcagcgggcagttc gcctggagccgactggccacgacaacggcgagcaacaccttgtccagtacgccattggtc ctgctgccacgcgagcacatgaacctgtggcgcagcttggcccccgagcctgcagcgcaa gcactgggcgggcgggcgcaacgggtcttggaggcgctgcgcgcgcagggtgcactgttc ttcgacgaactggtcgtggaggcccatctgctgcccagcgagctggaagctgccttgcag gagctggtgggagccggactggtaagcgccgacagcttcaccgggttgcgcagccttatc actccggcggcgaaacgcgcatcgcgcaacagccgccgcggccactcaccgctatccagc agcatggcccatgccggacgttgggcgttgctgcgcagaggcagtggcccggtggacgaa ggccagcgtacagaacacgtcgcccgcgcgctgctgcgccgctatggggtgatctgctgg cggctgctggagcgggaaagcgatgtgctgccgccctggcgtgaactgctgcgttgctat caccggctggaggcgcgaggggagattcgggggggacgcttcattgccgggctggcgggt gagcaattcgccttgccggaagcgatcggtttgctgcgccaggtaaggcgtagagcactg gatgggtcgctgatcgtcatcagcgccagcgacccgctgaacctgatcgggacgttgctt cctggggtgaaagtgcccgcggtcgcgggtaaccgtctactttatcgcgatggcgtgccg gtggcggcgcgggtggctgggcgttatagctacctggtggagggggtagcaggggagcag gcggtttggaagcagaagctgttgcgtgacatgggtgggggttga

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