Pseudomonas sp. VLB120: PVLB_07255
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Entry
PVLB_07255 CDS
T02897
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PVLB_07255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_07255
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PVLB_07255
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PVLB_07255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
HAMP
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AGZ34252
LinkDB
All DBs
Position
1624479..1626494
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLDAVEGIKEELKDRLEYLQKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDSLLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVDVGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADQVTGSMQRAIDETERRREKQIAFNQAHGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPAEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
ITQLRERLIAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgttacccgttttcagccggccggcgaccagcccgaggccatt
cgtcagatggtcgagggcatcgaggccgggctatcgcaccagacgctgcttggggtgacc
ggttcgggcaagaccttcagtatcgccaacgtcatccagcaggtgcagcgcccgacgctg
gtgctggcgccgaacaaaaccctggctgcgcagttgtacggagagttcaaggcgttcttc
ccgaacaatgcggtggagtatttcgtttcctactacgactactaccagccggaggcctat
gtaccgtcgtcggacaccttcatcgagaaggatgcctcgatcaacgaccatatcgagcag
atgcgcctgtcggcgaccaaggcgctgttggagcggcgcgatgcgatcatcgtgaccacc
gtctcgtgcatctacggtctgggcagccccgagacttacctgaaaatggtccttcacgtg
gaccgtggcgacaagctcgaccagcgtgcactgctgcggcgtcttgccgacctgcaatac
acccgcaatgaaatggatttcgcccgtgccacgttccgggtgcgtggggatgtgatcgac
atcttcccggccgaatcggacctggaagccatccgtatcgagctgttcgatgacgaggtg
gagaacatcgccgcctttgacccgttgactggcgaagtcttccgtaagttgccgcgtttt
accttctaccccaagagccactacgtcaccccgcgtgaaaccctgttggacgcggtggag
ggcatcaaggaggagctaaaggaccggcttgagtacctgcagaaggccaacaagctggtg
gaggcacagcgtctcgagcagcgcacccgcttcgacttggagatgattctcgaacttggc
tactgcaatggcatcgagaactactcgcgttatctctccggccgtccggccggcgcgccg
ccacccacgctttacgactacctgccgccagattccttgctggtgatcgacgagtcccat
gtcagcgtgccgcaggtgggcgccatgtacaaaggtgaccgctcccgtaaggaaaccctg
gtcgaatacggtttccgtctgccctcggcgctggacaaccggccgatgcggttcgatgag
tgggaggcggtgagtccgcagaccattttcgtttcggccacgcccggcccttatgaagcc
gagcatgctgggcgtgtggtcgagcaggtggtacggccgactggtctggtcgacccgcag
gtggaggtacgtccggcgcttactcaggttgacgacttgctgtcggagatccgcaagcgc
gtggacgttggcgagcgggtgttggcgacgaccttgaccaagcgtatggctgaagacctg
accgattacctggcggaccatgatgtgcgggtgcgttacctgcactcggacatcgacacc
gtcgagcgggtggagatcattcgtgacttgcgtctgggtacgttcgacgtgctggtgggc
atcaacctgctgcgtgaggggttggatatgccggaggtatcgttggtggcgattctcgat
gctgacaaggagggattcctgcgttccgagcgttcattgattcagaccatcgggcgtgcg
gctcgtaacctcaatggccgggcgattctgtatgccgatcaggtgacggggtcgatgcag
cgtgccatcgacgagactgagcggcgtcgggagaagcagatagccttcaaccaggcgcat
gggatcgtgcccaagggggtggtcaaagacatcaccgatattatggaaggcgctacggtg
ccgggtgcgcgtagcaagaagcgcaaggggatggccaaggcggcggaggagagtgctcgg
tacgaggcggaattgcggacgccggcggagatcaccaaacgcatcaagcagttggaagag
aagatgatgcagtttgcgagggatctggagtttgaggctgccgcgcagttgagggatgaa
attactcagcttcgtgagcgtttgatagccagctga
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