Pseudomonas sp. VLB120: PVLB_07555
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Entry
PVLB_07555 CDS
T02897
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_07555
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PVLB_07555
Archaeal homologous recombinant proteins
PVLB_07555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
cobW
AAA_22
nSTAND3
AAA_25
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AGZ34311
UniProt:
A0AA86ABS7
LinkDB
All DBs
Position
complement(1700288..1703932)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGSVPR
LEDIGREAKVPDADGEIPTSDPRNLLRRGTGSGFAEVDFLGIDGHRYRARWEANRARDKA
NGKLQNSRQSLYDLDSEQLLGSGKNEYKQLIEARLGLNFEQFTRAVMLAQSEFGAFLKAD
DKERSELLEKLTNTAIYTRLGQRAFSKARETSEAHSALKDRASHLLPMASEARAELDQRL
EQAQQQFKADQARERQLEQQRAWLVEQQQLQAQHNEAAQALKDAALAWEQLSGQRIDLQR
LERLAPQRHQFHRQQTLQAALAPLATTLSEQQRQHNDLNTRCTELEQALETSRQALSQAQ
GNQSENAPRLRQAFAEQDTLARLAQELGKLRETRQQADLAAGALQQQVQQLDEQQQRSQE
QLARIDAALAESASLHTLSNAWQAYRPQLQQLLQIGNRLSQGREELPRLQAQASQANAQL
QAQRDAFEVLFREAGAEPQALAEQLDLLGGMLQENRKQQRAVEELSRLHTREQELQQGIA
SLRERQQQALQQRQQLIGEGTAAKTELENAEQALTLTRQLLERQRLARNTSVEELRGQLR
DGEPCPVCGSAEHPFHQPEALLHSLGRHDQAEEAAAVALVEQLNARLIELRTQVGVVNGQ
IKEYQHQHGQLSEQLQPLAEQLAAHALWAALSAHDPAARGAWLDGQLRRLEQEISRDESR
QATLLAVQKEAARLNQQLQAAGEAQQQAQQRLDQQHQALDADQQRLEQALADFASLLPAD
ILQALRDEPAHAFLSLDQQIAQRLQQLEHQKDEQQEQQQRLQQLERLRDQQQTRVQRQQE
LQQQIDGLAEQMDKARAALTELLGVHPSAEAWQQSLEQQLEQARALEAQTAQHLQDARTQ
ALQLAGELKANEARRQALEQEHQQLRGEIAQWRAEHPELDDAGLDRLLALDDAQVIELRQ
QLQGAEKAIEQGRVVLQEREQRLQQHSAHTTVDASAEELDQALAQLREHLTSFEQQCAEL
RAQQADDQRRQQAHQALAGEIEQAYQQWQRWARLNALIGSASGDVFRKIAQGYNLDLLLH
HANAQLRQLARRYRLKRGGSALGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSDVEVCG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcgccattcgcctcaagaacctggcgtccctggccggtccgatcgacatc
gacttcaccgccgagccgctggccagcgccggcctgttcgccatcactggccctactggc
gccggcaagagcaccttgctggacgcgctatgcctggccctgttcggcagcgtgccacgg
ctcgaagacatcggccgtgaagccaaggtgccagacgccgacggcgaaatccccacctca
gacccgcgcaacctgttgcgccgcggcacgggtagcggctttgccgaagtcgacttcctg
ggcatcgatggccaccgctaccgggcgcgctgggaagcgaaccgcgcccgcgacaaggcc
aacggcaagctgcagaacagccgccagagcctgtacgacctggacagcgaacaactcctg
ggcagcggcaagaacgagtacaagcaactgatcgaagcacgcctgggcttgaacttcgaa
cagttcacccgcgcagtgatgttggcccagagtgagttcggcgccttcctcaaggccgac
gacaaagaacgcagcgagctgctggaaaagctcaccaacaccgccatctacacccgcctt
ggccaacgcgcgttcagcaaggcgcgggaaaccagcgaagcccacagtgccttgaaagac
cgcgccagccatttgctgcccatggccagcgaagcccgtgccgagcttgaccaacgcctg
gagcaggcccagcagcagttcaaggccgaccaggcccgcgaacgacaactggagcaacaa
cgggcctggcttgtcgaacaacagcagctgcaggcccagcacaacgaggctgcgcaggcg
ctcaaggatgcagcactggcgtgggagcagctgtccggacaacgcatcgacctgcagcgc
ctggaacgcctggcgccgcagcgccaccagttccatcgccagcagacgctgcaggcggca
ctggcaccgctggccaccaccctcagcgagcagcagcgccagcacaacgatctgaacacc
cgctgcaccgaacttgagcaggcgctggaaacttcacgtcaggcgttgagccaagcccaa
ggcaatcagagcgaaaacgccccacgcctgcgtcaggctttcgccgagcaagacaccctc
gcccgtctggcgcaagagctgggcaagctgcgcgaaacgcgccagcaggccgacctggcc
gccggcgcgttgcagcaacaggtgcagcaactcgatgagcagcagcaacgaagccaggag
caactggcacggatcgacgccgccctggcagagagcgcttcgctgcacacgctgagcaac
gcctggcaggcctaccgcccgcaactgcaacagctgctgcagatcggcaaccgcctcagc
caaggccgcgaggagctgcctcgcttgcaagcccaggccagccaggccaatgcccagctg
caagcacagcgcgacgccttcgaggtgctgttccgcgaggctggcgcagaaccccaggcg
ctggccgagcagctcgacctgctgggcggcatgctgcaggaaaaccgtaagcagcaacgc
gccgtggaagaattgtcgcgcctgcacacccgcgagcaagaactgcagcaaggcatcgct
tcgctgcgcgagcgccagcaacaggccctgcaacaacgccagcaactgatcggcgaaggc
accgccgccaagaccgagctggaaaacgccgaacaagccttgaccctgacccgccagttg
ctcgaacggcagcgcctggcacgcaacaccagcgtcgaggagctgcgtggccaactgcgt
gatggcgaaccttgcccggtgtgtggcagtgccgagcacccgttccatcagcccgaagca
ctgctgcatagccttggccgacacgatcaggccgaggaagcggcggcagtcgcattggtc
gaacagctcaatgcccgcctgatcgagctgcgcacccaggtcggtgtggtcaacggccag
atcaaggaataccagcatcagcacgggcagttgagcgaacaattgcagccgttggccgaa
caactggccgctcatgccctctgggcggcgctcagcgcacatgacccagcggcccgtggt
gcctggctggatggccagctgcgtcgcctggagcaggagatcagccgggacgagagtcgt
caggccaccctgctcgcggtacagaaagaagccgctcgcctcaatcagcaactgcaagcc
gccggcgaagcacagcagcaggcacagcagcgcctggaccagcaacaccaggcgctggat
gcggatcaacagcgcctggagcaggccctggcggacttcgccagcctactgccagccgac
attctccaagccctgcgcgacgaaccggcgcatgccttcctcagcctcgaccagcagatt
gcccagcgcctgcagcagctggagcaccaaaaggacgagcagcaggaacagcagcagcgg
ctgcagcaactggaacggttgcgtgaccagcagcagactcgtgtgcaacgccagcaagag
ctgcaacagcaaatcgatggcctggccgagcagatggacaaggctcgcgccgcactgact
gagctgttgggggtgcacccaagcgccgaagcctggcaacagtctcttgagcagcaactg
gagcaggcccgcgcgctcgaagcccagaccgcgcagcatctgcaggatgcacgcacgcaa
gccttgcagttggcaggcgaactgaaggccaacgaggcccgccgccaggcactcgaacaa
gagcatcagcaattgcggggtgagatcgcccagtggcgcgccgagcaccctgaactggac
gatgcaggtctcgaccgcctgctggcgctggatgatgcgcaggtgatcgagcttcgccag
caactgcaaggtgcggaaaaggccatcgaacagggccgcgtggtacttcaggaacgcgag
caacgcctgcagcagcactcggcgcacaccacggtcgatgcatcagccgaagagctggac
caggccctggcccaacttcgcgagcatctgaccagctttgaacaacaatgcgccgaactg
cgcgcccagcaagccgatgatcaacgtcgccagcaggcacaccaggcactggccggcgaa
atcgagcaggcctaccagcaatggcagcgctgggcgcggctcaatgcgttgataggttcg
gcatcgggtgacgtgttccgcaagatcgcccagggctacaacctcgacctgctgctgcac
catgccaacgcgcaactgcgccaactggcgcgccgctaccgcctcaagcgcggcggcagt
gcactgggcctgctggtgatggacaccgagatgggtgacgagctgcgttcagtgcactcg
ttgtccggtggcgaaaccttcctggtgtcgctggcccttgcacttgggctggcgtcgatg
gcgtcgagcacactgcgcatcgagtcgctgttcatcgacgaaggctttggcagcctggac
cccgagtcgctgcaactggccatggatgccctcgatggcttgcaggcccaagggcgcaaa
gtggcggtgatctcgcacgtacaagagatgcatgagcgcattccggtgcagatccaggtg
cgtcgccagggcaacggcctgagcgatgtcgaggtgtgcgggtga
DBGET
integrated database retrieval system
