Pseudomonas sp. VLB120: PVLB_07905
Help
Entry
PVLB_07905 CDS
T02897
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psv03032
]
PVLB_07905
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_07905
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PVLB_07905
DNA replication proteins [BR:
psv03032
]
Prokaryotic type
DNA Topoisomerases
PVLB_07905
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PVLB_07905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGZ34381
UniProt:
A0AAN0R0V4
LinkDB
All DBs
Position
1789796..1792405
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKTAGEA
PALSPKEKARRQLVARMGVDPEHGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQDAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKNAKV
RFEVARENGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAALV
YGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VAAGDFELRAKGRILKFDGYTRVMPQQSKPGEDDVLPEMAQGEALKLIQLDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLLTAESAENGMRANQPTMTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVLR
GKHRCPICATAMDAYLLDEKHKLHICGNNPDCAGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPSCKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVMEIVPHKHEIDPKYHFLCDAPQKDPEGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGSTWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctccccaccagc
ggttcggccagcgccagcaaagagccggccgccaagcgcggcaagactgcgggtgaggct
ccggccctgtcgcccaaggaaaaggcgcggcgccagctggtggcacgcatgggcgtcgac
ccagaacacggctggaaggccaagtacgagatcctgcctggcaaggagaaggtgatcgac
gaactgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggatcgc
gaaggggaggccattgcctggcatctgcgcgaagccattggtggggacgacagccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggatgccttctcccagccg
ggcgaactcgacatcgaccgcgtcaatgcccagcaggcgcggcgcttcctcgaccgggtg
gttggctacatggtttcgccattgctgtgggccaagatcgcccgcggcctgtccgctgga
cgggtgcagtcggtggcggtgaagctggtggtcgagcgcgagcgcgaaatccgggctttc
atccccgaggaatactgggaagtccacgctgacctgggcaccgccaagaacgccaaggtg
cgcttcgaagtggctcgcgagaacggcgaagccttcaagccgctcaatgaagcccaggcc
atggccgcactggagaagctcaaggcttccagctacagcgtggtcaagcgcgaagaccgg
ccgaccagtagcaagccgtcggcaccgttcattacctccaccttgcagcaggctgcgagc
aatcgcctgggcttcggggtgaagaagaccatgatgatggcccagcgtctgtacgaagcg
ggttacatcacctacatgcgtaccgactcgaccaacctgtcggccgacgccctggacatg
gcgcgcagctacatcgagcgtgagttcggcaagcagtacctgccggaagctgcgctggtg
tacggcagcaaggagggcgctcaggaagcgcacgaagcgattcgtccttctgacgtcaat
acccatccgaccaagctcagcggcatggaacgcgatgccgagcgcttgtacgagctgatc
tggcgtcagttcctggcctgccagatgccgccggcgcaatacctgtccaccagcgtcacg
gtcgctgctggcgacttcgagctgcgtgccaagggccgtatcctgaagttcgacggttat
acccgtgtgatgccacagcagagcaagccaggcgaagacgatgtgctgccggaaatggcc
cagggtgaggcgttgaagctgatccaactcgacccgagccagcatttcaccaagccaccg
gcgcgcttcaccgaggccagcctggtcaaggaaatggaaaaacgtgggatcggtcgtccg
tccacctatgcggcgatcatctccaccatccaggaccgtggctatgtgaccctgcacaac
cgccgcttctattccgagaagatgggtgacatcgtcaccgaacgcctctccgagagtttc
tccaatctgatggattacggcttcaccgccgacatggaagagaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtgctggacgagttctacggcgacttcagcaagaaa
ctgctgacggccgagtcggcagagaacggcatgcgtgccaaccagccgaccatgaccaac
attccgtgcaaggaatgcgggcggccgatgatgatccgtaccgcttcgaccggcgtgttc
ctgggttgctcgggatacagcctgccgcccaaagagcgctgcaaggccaccgtgaacctg
gtgccgggtgacgagattgctgcagacgacgagggcgagtcggaatcccgcgtgctgcgt
ggcaagcaccgttgcccgatctgcgcgacggcgatggatgcctacctgctggacgaaaag
cacaagctgcatatctgcggtaacaacccggactgtgcgggctacgagatcgaggaaggc
aactaccggatcaagggctacgaagggccgagcctggagtgcgacaagtgcggtagcgag
atgcagctcaagacaggccgtttcggcaagttcttcggttgcaccaatccttcgtgcaag
aacacccgcaagctgctcaagagcggcgaagcggcgccaccgaagatggataaggtggac
atgccggagctcaagtgcgagaaggtcgacgatacctacgtgctgcgcgacggcgcttct
gggctgttcctggccgccagccagttccccaagaaccgcgaaacccgggccccgctggtg
atggagatcgttccacacaagcacgagatcgaccctaagtaccacttcctctgcgatgcg
ccgcagaaggaccctgaaggccgtccagcggtgattcgctacagccgcaagaccaaggag
caatacgtgcagtccgaggtcgatggcaagccgaccggctggaaggcgttttacgacggg
agtacctggaaagtcgaagacaagcgctga
DBGET
integrated database retrieval system
