Pseudomonas sp. VLB120: PVLB_12850
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Entry
PVLB_12850 CDS
T02897
Name
(GenBank) Fis family GAF modulated sigma54 specific transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psv03000
]
PVLB_12850
Transcription factors [BR:
psv03000
]
Prokaryotic type
Helix-turn-helix
Other families
PVLB_12850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
AAA_lid_14
PAS_4
AAA_5
HTH_30
PAS
PAS_9
AAA_2
HTH_28
HTH_1
HTH_7
HTH_29
AAA
HTH_20
HTH_22
HTH_23
HTH_50
AAA_16
Mga
HTH_11
HTH_17
AAA_7
AAA_22
Diguanyl_cycl_sensor
HTH_Tnp_ISL3
Phage_CP76
Motif
Other DBs
NCBI-ProteinID:
AGZ35356
LinkDB
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Position
complement(2841722..2843635)
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AA seq
637 aa
AA seq
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MARHIPITNAQDTLHESRQARLKLASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVG
LGLEHGHDLQALLERNRLLLDAVTPELDYLVSRQGKAGIIILGDAQANVLAIEGQKHVLQ
REGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRG
EVIGVLDITREGVMAQPQDSLSTLMLAAGNIESRMFGLCHPEHLVLAFHSRPQYLNSAWH
GLLALSLDGEVLAANDNACQLLQLPRQGLIGRRSSDLLGERSPAFIARLWQGGVSSVQTA
KGEFFFRALQLPRHGHLNGSVATNKPAPAARSQALESLAGGDPRLARNLRMARQGLGNGL
PVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRR
GGMVGRLMQAHGGTLFLDEIGDMPVALQARLLRVLQERRVAPLGAGDEQEIDVALICATH
RDLKRLVQEQHFREDLYYRVNGVSLRLPALRERDDLARIIEALLHKAGAKGVSLDPALAA
LLEGFDWPGNIRQLEMVVRTALAMREEGEQVLTLDHLTDCLLDELATGGAPSGSLKDNEL
ELIRGALARHHGNVSAAAEALGISRATLYRKLKQLRG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgacacatacccataacaaacgcccaggacacgcttcacgaatcccgccaggcc
cgtttgaagctggccagcgaaggcgagttgccactgggcatgctgcgcgacgaaatcgac
gcttcctggcggcgcagccttggccatggcctcgattgcctacagggcgaacaagtcggc
ctgggccttgaacacggccacgacctgcaggcactgctcgaacgcaatcgcttgttgctg
gacgcggtcactcctgaactggattacctggtatcccgccagggcaaagctggcatcatc
atcctcggcgatgcccaggccaatgtgctggccatcgaaggccagaagcatgtgctccag
cgcgaaggactgcgcgacctgcacccaggcagctgctggagcgagtcattgcgcggcacc
aacgccatcggcaccgccgtggtggagggccgtccgaccttgatcaattgcggcgaacac
tacctggaccgactcagcccgttttcctgcacctcggtgccgctgcgtgacccgcgtggc
gaggtgatcggtgtgctcgacatcacccgcgagggggtcatggcccagccacaggacagc
ttgtcgaccctgatgctggcggcaggcaacatcgaaagccgaatgttcggcctgtgccac
cccgaacaccttgtcctggccttccacagccgtccgcaatacctcaacagcgcctggcat
ggcttgttggcgctgagtctggacggcgaagtactggcggccaacgacaacgcctgccag
ctgctgcagttgccgcgccagggactgatcggccggcgcagtagcgacctgctgggggag
cgttcgccagccttcatcgcgcgcctgtggcagggtggggtgagcagcgtacagaccgcc
aagggtgagttctttttccgtgccttgcagttgccgcgacatgggcacctcaatggcagc
gtggcgacgaacaaacctgcaccggccgcccgctcgcaggcgctggagtcattggccggt
ggcgacccgcgcctggcgcgcaacctgcgcatggcgcgccagggtttgggcaatggtctg
ccggtgctgctgttgggcgaaaccggcaccggcaaggaggtggtggcccgcgcactgcac
caggcgagcccccgggccgacaagccattcgtggcggtcaactgcgccgccattcccgag
ggtttgatcgagtcggagctgttcggctaccgcgagggcgcttttaccggctcgcgccga
ggcggcatggtcggacggttgatgcaggcccacggcggcacgttgttcctcgacgaaatc
ggtgatatgccggtggccttgcaggctcgtctgctgcgcgtcttgcaagagcgccgggtg
gcgccgctgggtgcgggcgatgagcaagagatcgacgtcgcgctgatctgtgcgacccac
cgcgacctcaagcgcttggtgcaggagcagcattttcgcgaagacctttactaccgggtc
aatggcgtgtcactgcgcttgccagcgctacgcgagcgcgatgacctggccaggatcatc
gaagccctgctgcacaaggccggcgccaagggcgtcagcctcgacccggcgctggctgcg
ctgcttgaaggtttcgactggccaggcaacatccgccaattggaaatggtcgtgcgcacc
gcactggccatgcgcgaggagggtgaacaggtgctgaccctcgatcacctcaccgactgc
ctgctcgatgagctcgcaacgggcggcgcaccgtcgggcagcctgaaggacaacgagctg
gaattgatccgcggcgccttggcccggcaccacggcaacgtttcggctgccgctgaagcg
ctgggcatcagccgggcgacgttgtaccgcaagctcaagcagttgcgcggctga
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