Pseudomonas sp. VLB120: PVLB_15915
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Entry
PVLB_15915 CDS
T02897
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psv03032
]
PVLB_15915
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_15915
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PVLB_15915
DNA replication proteins [BR:
psv03032
]
Prokaryotic type
DNA Topoisomerases
PVLB_15915
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PVLB_15915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AGZ35967
UniProt:
A0AAN0R3Z7
LinkDB
All DBs
Position
3482728..3483750
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AA seq
340 aa
AA seq
DB search
MLDHPLPATLHYVDDTQPGLTRRKWRGRFIYLDPEGQRVRDGETLARIAALAIPPAYTDV
WICLDPQGHLQATGRDARGRKQYRYHTQWRELRDQHKFGRMLAFARALPKLRKHIDSHLA
RPGLDREKIIALVVSLLDSTLIRIGNPQYLHDNKSYGLTTLRNRHVTVEGSTIRFQFRGK
RGVEHDVTLRDRRLANLLKRCIELPGQTLFQYLDEQGQRRSIGSSDINQFLQQLTGADFT
AKDYRTWAGSSLALSLLRPLAWEPESEAKRQVAAIVRQVASRLGNTPAVCRRCYIHPAVL
EHFHLGQLAALPRSRNRQGLEPEEVALLLFLQALENSQAH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccaccccctgcccgcgaccttgcactacgtcgacgacacccaaccaggactg
accaggcgcaaatggcgtggtcggttcatctacctggacccagagggccagcgggtgcgc
gatggcgagacgctcgcgcggatcgccgccctggccatcccccccgcctataccgatgtg
tggatatgcctggacccacagggccatctgcaggccactggccgcgacgcccgtggccgc
aagcagtaccgctaccacactcaatggcgcgagctgcgcgaccagcacaagttcgggcgc
atgctggccttcgccagggccctgcccaagctgcgcaagcatatcgacagccacttggcg
cgcccggggctggatcgagagaaaatcatcgccttggtggtgagcctgctcgacagcacc
ctgattcgcatcggcaacccacagtacctgcacgataacaagtcgtatggcctgaccacc
ctgcgcaatcgccacgtcaccgtcgaagggagcaccatacgcttccagttccgcggcaag
cgcggcgtcgagcatgatgtgaccctgcgcgaccgacgcctggcgaacctgctcaagcgc
tgtatcgagctgcctgggcagacactgttccagtacctggatgagcaaggccagcgccgc
agcatcggctcaagcgatatcaaccagttcctccagcaattgaccggcgccgacttcacc
gccaaggactatcgcacctgggccggtagcagccttgccctgagcctgctcaggcctctg
gcctgggagccggaaagcgaagccaaacgccaggtggcagccatcgtcaggcaggttgcc
agccggctgggtaacactcccgcggtgtgccggcgctgctacatccacccggcggtactg
gagcatttccatctcgggcaactggctgcattgccccgcagccgcaaccggcagggactg
gagcctgaggaggtagccttgctgctgttcctgcaggcgctggaaaattcgcaggcccat
tga
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