Pseudomonas sp. VLB120: PVLB_17740
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Entry
PVLB_17740 CDS
T02897
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_17740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_17740
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_17740
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PVLB_17740
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PVLB_17740
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PVLB_17740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
HTH_23
GerE
ResIII
HTH_29
DUF6374
Motif
Other DBs
NCBI-ProteinID:
AGZ36329
UniProt:
A0AAN0R4L2
LinkDB
All DBs
Position
complement(3914860..3917004)
Genome browser
AA seq
714 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQAAIIECVAKGGDALVLMPTGGGKSLCFQVPGLLRTGLT
VVVSPLIALMDDQVATLDELGVAAAALNSTLSPEQQRDLAGRLRRGEVKMLYLAPERLVQ
PRMLEFLRGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCEQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLAYFDEILEQPCGHCDNCVDQVQTWDATEPARQALSTVFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKALAEAEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTVAKTSSSAGSPASQLVRAEERELWEALRT
LRRKLAEEHSVPPYVIFPDSTLLEMLRSQPASLSDMAQVSGVGARKLERYGQAFLEVLNG
AGGTAEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLEQA
LDLPEDLLMEVQDAFLDGEGELPPVSAIAPMFGARVPEGVLYCVRAALAAEFEL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggatatcttcggctacgacagtttccgcggg
cgtcaggccgcgatcatcgaatgcgtggccaaaggtggcgatgccttggtgctgatgccc
accggtggcggcaagtcgctgtgtttccaggtgcccggattgctgcgcacgggcttgact
gtggtggtgtcgcccctgatcgcgctgatggacgatcaggtcgctactctcgatgagctg
ggcgttgcggccgccgcgctgaattcgaccttgagccccgagcagcagcgcgacctggcc
gggcgtttgcgccgcggcgaagtgaagatgctctacctggcgcctgaacgtctggtacag
ccgcgcatgctggagttcctgcgaggcctggacatcgccctgttcgccatcgacgaggcc
cattgcgtttcgcagtggggccatgacttccgccctgaatacctgcaactgggccagttg
gccgaattgttcccgcatgtaccgcgcattgcgctgacggccaccgccgacatgcgcacc
cgggaggaaatcgtccagcgcctgcacctgcagggggctgaacgtttcctgtcgagtttc
gaccggccgaacatcttctaccgtatcgtccctaaggaggcgccgcgcaagcagctgatg
gcattcctgggcgagcgtcgtggcaacgctggcatcgtctactgcctgtcgcgcaagaag
gtcgacgaaaccgctgccttcctgtgtgagcagggcttcccggcgctgccgtatcacgcc
ggcctggctgccgagacacgggcagccaaccagcaccgcttcctcaacgaggaagggttg
atcatggtcgccaccattgctttcggcatgggcatcgacaagcccaacgtgcgtttcgtg
gctcacctggacctgccaaagtcgcttgaagcctactaccaggaaaccggccgcgccggc
cgtgacgggttgccgtccgacgcctggatggcgtacggcctgcaggacatggtgatgctc
aagcagatgctgcagaactccgagggcgacgaacgccacaagcgcatcgagcagcacaag
ctcgacgcgatgctggccctgtgtgaagaaacccgctgccggcgtcaggccctgctggct
tatttcgatgaaatcctcgagcagccatgtggccattgcgacaactgcgtcgaccaggtt
cagacctgggatgccacggaaccggcgcgccaggcgctgtcgacggtatttcgcacaggt
cagcgctacggtgtcggtcatctggtggatgtcttgctgggcaaggacaccgaaaaggtg
cgcaacttcggccacgagaaactttcggtgttcggggtaggcaaggcgctggccgaggcc
gagtggcgttcgctgttccgtcaactggtcgcacgcgggttggtggacatcgacctagag
ggttatggcggtttgcgtctgtccgacagctgcaggcccctgctgcgcggcgaagtgacc
ttgcagttgcgccgcgacctcaagccccagacggtggccaagacgtcctccagcgctggc
agccctgccagccaactggtgcgcgccgaggagcgcgagctgtgggaagcgctgcgcacg
ttgcggcgcaagctggccgaggagcacagcgtgccaccttatgtcatctttcccgactcg
acgctgctggagatgctgcgcagccagcctgccagcctcagcgacatggcccaggtcagc
ggcgtcggtgcgcgtaaactggagcgctacggccaggccttcctcgaggtgctcaatggc
gcgggcggcacggctgaggcgccgaaggtggtgctcgacttgcgccacgaactggtcagc
ctggcccgtgccggcatgacacctgcgcaaatcgccggccagctcaactgcagcgagaag
aacgtctatagcctcctggccgaagcgctgggtcgtcaggaactgagcctggagcaggcc
ctggatcttcccgaagacctgctcatggaagttcaggacgcctttctcgacggtgagggc
gagttgcctccggtgtctgcgattgcgccaatgttcggggcgcgggtgccggagggggtg
ctctattgcgtccgggcggcgctggcggcggagttcgagctctga
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