Pseudomonas sp. VLB120: PVLB_17860
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Entry
PVLB_17860 CDS
T02897
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psv03009
]
PVLB_17860
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVLB_17860
Ribosome biogenesis [BR:
psv03009
]
Prokaryotic type
rRNA helicases
PVLB_17860
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGZ36353
UniProt:
A0AAN0R4R5
LinkDB
All DBs
Position
complement(3947947..3949269)
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AA seq
440 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLN
RLVDLRAPRVEIRSLILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAALLRK
VPDVLVGTPGRLLEHLNAGNLDLSHVQVLVLDEADRMLDMGFAEDMERLCKECENREQTL
LFSATTGGAALRDVIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLAN
ETFDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT
DVAARGLDIEGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER
YLKQQFERRVIKEVKGTYNGPKKVKASGKAAGTKKKKVEKKTGDKKAAAKRKPAAKPKAK
APLASSDGMAPLKKRKPVAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgttctcccaattcgccctgcacgaacgcctgcttaaagccgtggccgagcttaaattt
gtcgagccaactccggtgcaggctgcggccatccccctggccctgcaagggcgcgacctg
cgtgttaccgcacagaccggcagcggcaagaccgccgcgttcgtcctgccgctgcttaac
cgcctggtcgacctgcgtgcgcctcgggtggagatccgctcgctgatcctgctaccgacc
cgtgaactggcccagcagaccctcaagcaagtgcagctgttctcccagttcacctacatc
aagtcgggcctggtgacaggcggcgaagacttcaaggaacaggccgcgctgctgcgcaag
gtgccagacgtgctggtcggcaccccgggccgtctgctcgaacacctcaacgccggcaac
ctcgacctgtctcatgtgcaggtattggtgctggacgaggccgaccgcatgctcgacatg
ggctttgccgaggacatggagcgcctgtgcaaggagtgcgagaaccgcgagcagaccttg
ctgttctccgccaccactggcggtgcggccctgcgcgatgtcattggcaaggtgctcaag
gacccggagcacctgatgctcaacagcgtctcgcaactggccgagggcactcgccaacag
atcatcaccgccgaccacgaccagcacaaagagcagatcgttcagtggttgctggccaac
gagaccttcgacaaggcgatcatcttcaccaatacccgtgcgctggccgaccgcatttac
ggccacctggtggccaaggatgtgaaggctttcgtcctgcacggcgagaaggaccagaaa
gaccgcaagctggccatcgagcgcttcaagcagggcagttccaaggtcttggttgccacc
gatgtggcggcccgcggcctggacatcgaaggcctggacctggtgatcaacttcgacatg
ccgcgcagtggtgacgagtacgttcaccgcgtgggccgcactggccgtgccggtggcgaa
ggcctggcgatctcgctgatcacccacaacgactggaacctgatgtcgagcatcgaacgc
tacctcaagcagcagttcgagcgccgtgtgatcaaggaagtgaaaggcacctacaacggg
ccgaagaaggtcaaggcatcgggcaaggcggctggtaccaagaagaaaaaggtcgagaag
aagactggcgacaagaaggccgctgccaaacgcaagccggccgccaagccgaaggccaag
gcaccgctggccagcagcgatggcatggcgccgctgaaaaagcgcaagcctgtggctgag
taa
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