Pseudomonas sp. VLB120: PVLB_18095
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Entry
PVLB_18095 CDS
T02897
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_18095
Enzymes [BR:
psv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVLB_18095
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PVLB_18095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ABC_tran
ResIII
T2SSE
NACHT
AAA_30
AAA_25
AAA_11
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGZ36400
UniProt:
A0AAN0R4N8
LinkDB
All DBs
Position
complement(4000931..4004836)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLKNLDHAMIADRHRLRRQIHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPHIRYDDSLPIAAKRDEIKKALSENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVETWYRPLTSEQDEEGNQVEDDLTVDQAILATLDELAQHERSEGKGPGDVLV
FLPGEREIRDAADILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARQGSLQEILIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLAVNKDPSDYQRMHKAILSGLLSQIGHKTEDGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLATHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVASRELFIREALVGGEIQSRAKCLSANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDPNLLIMREEDVLAREAS
EVTAAQYPDSLQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEAWD
ESVRLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRNDKTEQPVQAK
AFSEVAQTAQQKIAGLSMTVYPALVEANGTVREARFSTLAEAEFQHRRALQRLLLQQLAE
PAKYLRGKLPGLTELGLLYRELGRIEALVEDILLASLDSCILEGEDPLPRDGAALAGLAE
RKRGSWAEHAERLARQALEVLKLWHGLQKRFKGKIDLSQAVSLNDIKQQLSNLVYPGFVR
ETPGVWFKELPRYLKAVELRLEKLGAQVQKDRVWSGELGNLWAQYKARADKHAQEGKRDE
QLTLYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccaattgctgaaaaacctcgaccacgccatgatcgccgac
cgccatcgactgcggcggcagatccatgagctgcgcaagcgccctgacgaagccaagctg
gcgcaatgggtggaaaaggtccaggcatcctgcgcccaggtcaccgcacgccagcagagc
gtgccgcacatccgctacgacgacagcttgccgattgccgccaagcgcgacgaaatcaag
aaagccctgtccgaaaaccaggtgctggtgatcgcaggtgagaccggctcgggcaaaacc
acccagctgccgaagatttgcctggagcttggccgtggcagccatggcctgatcgcccat
acccagcctcggcgaatcgctgcgcgcagcgttgccgcgcgggtggcagaagagctgggc
acgccgttgggcgggttggtgggttatcaggtgcgcttcgaagaccagagcgacagcaac
accttggtcaagctgatgaccgacggtatcctgctcgctgaaacccagcacgaccgcttc
ctcgaacgctacgacacgatcatcgtcgacgaggctcacgagcgcagcctgaacatcgac
tttctcctgggctacctcaagacgctgctgcaccgtcgtcccgacctgaaactgatcatc
acttcggcgaccatcgacctggagcgcttctccaagcacttcgacggcgcgccgatcatc
gaggtgtccggccgtacctacccggtagaaacctggtaccgcccgttgaccagcgagcag
gacgaggaaggcaaccaggtcgaggacgatctcacggtcgaccaggcgattctcgctacc
ctggacgagctggcccagcatgagcgcagcgaaggcaaggggccgggcgatgtgctggtg
ttcctgcctggtgagcgcgagattcgcgatgccgccgacatcctgcgcaaggcccagctt
cgccacaccgagatcctgccgctgtatgcccggctttccccggccgagcagcagcgcatt
ttccagccccataccgggcgccgggtggtgctggcgaccaacgtggccgaaacctcgctg
acggtgccgggtattcgttacgtgatcgataccggtactgcacgcatcagccgctacagc
taccgcgccaaggtgcagcgcttgccgatcgaggccgtgtcccaggccagtgccaaccag
cgcaaaggccgctgcggccgcgtcgagccgggtatttgcgtgcgtctttacagcgaagag
gatttcaacggccggccagcgttcaccgacccggaaatcctgcgcaccaacttggcggcc
gtcatcctgcagatgctgcacctgcgcctgggcgccatcgatgccttcccgttcatcgaa
ccgccggatggcaaggccatcagtgacggcttcaacctgctgcaggagctgtcggcggtc
aaccgcgagaaccagctgacgccgctgggccgccagctggcgcgcttgccgatcgacccg
cgactgggccgtatgctgctcgaaggcgcgcgccagggcagcctgcaggaaatactgatc
gtcgccagtgcattgtcggtgcaggacccccgcgaacgcccacccgagcgacagcaagcc
gccgaccaggcccatgcccagtggaaggatgtcgactccgacttcgctgccctggtcaat
ctgtggcgcggtttcgaggagcagcgccaggcgctgaccgccaacccgctgcgcaactgg
tgccggaaaaacttcctgaattacctgcgtctgcgcgaatggcgcgatgctcatcgccag
ttggcgctgatctgccgcgacctgcaattggcggtgaacaaggatccgtcggactatcag
cggatgcacaaggccattctcagcggattgctgagtcagatcggccacaagaccgaagat
ggcgactaccagggcgcccgccagcggcgtttctgggtgcatccgtcctcggggctgggc
cgcaagcgcccgcagtgggtgatggccgccgaactggtggaaaccaccaagctgtatgcg
cggatggtggccaagatcgagcccgactggatcgaaccgctggccacgcacctggtcaag
aagaaccatttcgaaccgcattgggagaagaagcgcgggcaggtggtggcctacgaacag
atcaccctgtacgggctgatcctggtgggccgccgtccggtgcacttcgggcccatcgac
ccggtggcttcgcgtgagttgttcattcgtgaagcgctggttggtggcgagatccagtcg
cgggccaagtgcctgtcggccaacaagcgcctgctcgaagaactcgacgagctggaagcc
aaggcccgccgccgtgacatcctggccgacgaagagaccctctacgccttttatgaagcg
cggctaccggcagagatccaccagaccgcaaccttcgacagctggtaccgtatgggcagc
cagaaggaccccaacctgttgatcatgcgcgaggaagacgtgctggcccgtgaagccagc
gaggtcaccgcagcgcaataccccgacagcttgcaggtgggtgacctgcgcttgccgttg
agttaccacttcgagccaggccacccgcgcgatggcgtgaccgtgcgggtgcccgcgccg
ttgctgccgagcctgccgggcgagcgcctggagtggctggtgccgggcttgctggaagcc
aagtgcgtggccttggtgcgtaacctgcccaaggccctgcgcaagaatttcgtgccggta
cccgacttcgtcaaggcatcgcttgcccgcatgactttcggccaaggcgcattgccccag
gcgttgggccaggagttgctgcgcatgacgggcgctcgggtgtccgatgaggcctgggac
gagtcggtgcgcctggtcgaagggcacctgcggatgaacatcgaagtggtcgatggccaa
ggcaagttcctcggcgaagggcgtgacctggccgagctgacggcacgtttcgctgccgcc
agccaggcagcgctggccgtaccgcgcaacgacaaaaccgagcagccggtgcaggccaag
gctttcagcgaagtggcgcaaaccgcccagcagaagatcgcggggttgtcgatgacggtc
tacccggcgctggtcgaagcgaacggcaccgtgcgcgaggcgcgcttctcgaccttggcc
gaggctgagttccagcatcgtcgcgccctccagcgtctgttgctgcagcagttggccgaa
cccgccaagtacctacgtggcaagttgccagggctgaccgagttgggcttgctgtaccgc
gaactgggccgtatcgaggcgctggtcgaggacattctgttggccagtctcgacagttgc
atccttgaaggggaagacccgctgccgcgcgatggcgccgcattggccggcctggccgaa
cgcaagcgcggtagctgggccgagcatgccgagcgtctggcccgccaggccctggaggtg
cttaagttgtggcacggcctgcaaaagcgcttcaagggcaagatcgacctcagccaggcg
gtgtcgctcaacgacatcaagcagcaactgagcaacctggtgtatccaggcttcgtgcgc
gaaacaccgggagtctggttcaaggagttgccgcgctatctcaaggccgtcgagctgcgt
ctcgagaagctgggcgcccaggtgcagaaggacagggtctggagcggcgagctgggcaac
ctgtgggcacagtataaggcgcgtgccgacaagcatgcccaggagggcaagcgtgacgag
caactgacgctgtaccgctggtggctggaagagtatcgcgtatcgttgttcgcccagcag
ttgggcaccaaggtgccaatttccgacaagcgattaagcaaacagtggagtcaggtagag
ggctaa
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