Pseudomonas sp. VLB120: PVLB_19755
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Entry
PVLB_19755 CDS
T02897
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03410
Base excision repair
psv03430
Mismatch repair
psv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PVLB_19755
03430 Mismatch repair
PVLB_19755
03440 Homologous recombination
PVLB_19755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_19755
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PVLB_19755
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PVLB_19755
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PVLB_19755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGZ36732
UniProt:
A0AAN0R5H8
LinkDB
All DBs
Position
complement(4345827..4347536)
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AA seq
569 aa
AA seq
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MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLGRLLPYQQLKGIEAAVDLL
VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVQV
ALQRQPQLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRSLGRYQTQAQPNIGELLDLVSLGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAMDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGG
HAMAAGLSLPEANFPAFAEAFDEEVRRQLREEDLTGRLLSDGTLAVEEFHLDLAKALRNA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGAVKLDGIAFGIDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgcccactgccgccgaccctgccatttctgggtaacctacccccg
ttgttgacgcgcttgtacgccgcccgtggcgtgcaatccgaggctgagctggacaaaagc
ctggggcgcctattgccgtaccagcaactcaaggggatcgaggcggcggtcgacctgttg
gtggaggcgatcgaccagcgccagcgaatcctcatcgtcggcgacttcgatgccgacggt
gcgacggccagtacggtgggcgtgctcggcctgcgcttgctgggtgcggcccatgtcgac
tacctggtgcccaatcgtttcgagtacggctacggcctgaccccggagattgtccaggtc
gcattgcaacgccagccgcaattgctggtcacagtcgacaacgggatctccagcgtggac
ggtgtggctgctgcaaaggccgcggggctcaaggtgctggtgaccgaccaccacctgccg
ggcgagcaattgccggatgccgacgccatcgtcaaccccaaccagccgggctgcgagttc
ccaagcaaggcgctggccggcgtcggggtcatcttctacgtactgatggccttacgtgcg
cgcctacgcagcctggggcgctaccagacccaagcccaaccgaatatcggcgagttgctc
gacctggtgtcccttggcagtgtggcggacgtggtgcccctggatgccaacaaccgcatc
ctggtgcaccagggcctcgagcgcatccgtgcaggccgcgctcgtcctggcctcaaggcc
atcctggaagtggcgcggcgtgatcatcggcgtatcacctcgaccgacctcggcttcatt
ctcggcccacggctgaacgcggccgggcgactggatgacatgagcctgggtatcgaatgc
ctgctgtgcgaggacgccgccctggcgatggacatggcccagcagctggatgacctgaac
caggaccgcaagtccatcgagcagggcatgcaacgcgaagccctggcccagctcaaggac
ctgccggtcgagtccatgccctatggcctgtgcctgttcgacgccgactggcaccagggg
gtgatcgggattcttgcttcgcgcctgaaagagcgctaccaccgtcctaccatcgcgttt
gccgatgcgggggagggcatgctcaagggctcggcgcgctctgtgccgggctttcatatt
cgcgatgcgttggatgccgtggcagcccggcatccgcagctgatcagcaagtttggtgga
catgccatggccgccgggctttccttgccggaggccaacttcccggcattcgccgaggcg
ttcgacgaggaagtccgtcgccagttgcgcgaggaggacctgaccggccgcctgttgtcc
gatggcacccttgcggtcgaagagttccacctcgacctggccaaggccctgcgcaacgcc
ggcccttgggggcagcacttccccgaaccgctgttccatggcgtgttccaactggtcgag
caacgggtggtcggcgagcggcacctgaaggtggtgctcaagagcgaatgtggtgccgtg
aagttggatggcattgccttcgggatcgaccgcgaggtctggccaaaccccaccgtgcgt
tgggtggaattggcctacaagctggatgtgaacgagtttcgcggtaatgaaagcgtgcag
ttgatgatcgcccacatggagccgcgctga
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