Pseudomonas sp. VLB120: PVLB_21530
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Entry
PVLB_21530 CDS
T02897
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PVLB_21530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psv03021
]
PVLB_21530
Transcription machinery [BR:
psv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PVLB_21530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_11
HTH_38
HTH_DeoR
HTH_7
HTH_29
HTH_IclR
HTH_6
HTH_28
HTH_40
GerE
HTH_31
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AGZ37085
LinkDB
All DBs
Position
4742213..4742728
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AA seq
171 aa
AA seq
DB search
MQMNDTLKPTEVALLYQSHHAWLRGWLRSRVGCHEHAADLAQDTFVRLLRARQVSPLKEP
RAYLSSIARGLMIDQFRRRALERAYLESLATLPEAEIPSEEHRLVILDTLERLDRALQQL
KPRARQAFLLAQLDGLSIAQIALRLDVSRATVERDLAKALGVCYRLRYADL
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgaacgacacgctcaagcctaccgaggtcgcgctgctctatcagtcgcaccat
gcctggcttcgcggttggttgcgcagccgggtcggttgccacgaacacgccgccgacctg
gctcaggacaccttcgtgcgcctgctgcgtgcgcgccaggtttcaccgctcaaagaaccc
cgcgcctacctcagcagtatcgcccggggcctgatgatcgaccagttccgacgccgggca
ttggaacgggcctacctggaaagcctggccaccctgccagaggcggaaatacccagcgaa
gagcaccggctggtcatcctcgacaccctcgaacgcctcgaccgcgctctgcagcagctc
aagcccagggcgcgccaggccttcctgttggcccagctcgatggcctgagcattgcccag
atcgccctgcgcctggacgtatcgcgtgccaccgtcgaacgcgacctggccaaggccctg
ggcgtttgctaccggttacgctatgccgacctctga
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