Pseudomonas sp. VLB120: PVLB_22385
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Entry
PVLB_22385 CDS
T02897
Name
(GenBank) Fis family GAF modulated sigma54 specific transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
psv
Pseudomonas sp. VLB120
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psv03000
]
PVLB_22385
Transcription factors [BR:
psv03000
]
Prokaryotic type
Helix-turn-helix
Other families
PVLB_22385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
PAS_4
AAA_5
PAS_9
PAS_8
HTH_17
HTH_7
HTH_22
HVO_A0261_N
AAA_2
HTH_50
RWP-RK
HTH_23
HTH_AraC
AAA
HTH_Tnp_1_2
dnstrm_HI1420
Diguanyl_cycl_sensor
HTH_30
PAS_7
HTH_10
MCM
Mga
Motif
Other DBs
NCBI-ProteinID:
AGZ37256
LinkDB
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Position
complement(4936691..4938628)
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AA seq
645 aa
AA seq
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MQSNPFSSHAQQVHTVARGEAGGAGSDPSIARSWLRCLEDYHLDPALIEAPVVLEHGRLL
ESRERLRQVLKIADSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPTERRSFERAGLWL
GADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGELLAVLDVS
SARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFD
GEGRICAANQSALNLLGTVRGGLLGKPMEQFFACSHDDLFSRAQPQGSTAWPLHTRDGRL
VFASLRGRARAPAWSVPVSLPQAPTVAEPGICLLDPALQHEFRRSVRVFERDVPLLLRGE
TGCGKEAFAQAVHQASQRRGKPFVAVNCASIPESLIESELFGYRGGSFTGARKEGMRGKL
LQADGGTLLLDEIGDMPFALQTRLLRVLEERQVVPIGGEPQAVDVRIISATHRDLLERVE
QGCFREDLYYRLNGLEVALPAVRARSDKEQLLEFLLRQESQGQVVQLAPEARQALLGFAW
PGNVRQLRNVLRTLVALCDDGRIEYLDLPAIVREGATLDRDVDDTAAEGGGVLAMGAPLQ
SAERDTLLATLEAKHWHMTHVAEHLGISRNTLYRKLRKHGIARVV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaacccgttcagcagccatgcccagcaagtgcataccgtcgcccgcggcgag
gcgggcggcgccggcagcgatccctccatcgcccgttcctggctgcgttgcctggaggac
tatcacctcgatccggcgctgatcgaagcccctgtggtgcttgagcatgggcgtctgctg
gagagccgtgagcgcctgcgccaggtgctcaagatcgccgatagcgaaatgaacagcctg
catcagcaactctccggtgccggccacgcggtgctgttgaccgacgctcgcggggtcatc
ctcaattgtgtcactgctcctaccgagcgccgcagtttcgagcgcgccggcctgtggctg
ggcgccgactggagcgaagcccgtgagggcaccaatggcatcggcacgtgtctggtcgag
cgccaggcgttgaccatccaccagaacgagcacttccgtggccgccacaccgggctgaca
tgctcggcgagcccggtcttcgacccccatggcgagttgctggcggtgctcgatgtgtcg
tcggcgcggcctgacgtctcgcgccagagccagttccacaccatggcgctggtcaacctg
tcggccaagatgatcgaaagctgttacttcctgcgccatttcgagcagcagtggctgctg
cgctttcacttgcaggccgagtcggtggggctgttcagcgaagggttgctggccttcgat
ggcgaagggcgcatctgcgcggccaaccagagcgcactgaacctgttgggcaccgttcgt
ggcgggttgctgggcaagccgatggagcagttcttcgcctgcagtcatgacgacttgttc
agccgggcccagccccagggcagcaccgcctggccgctgcatacccgtgatggccgcctg
gtgtttgccagcctgcgcggtcgggcgcgggcgccggcgtggtcggtgccggtgagcttg
cctcaggctcccactgtggcagagccgggcatttgcttgctcgacccggcgctgcagcat
gagtttcgcaggtcggtgcgggtgttcgagcgtgatgtacccttgctgctgcgcggtgag
accggctgtggcaaagaggccttcgcccaggccgtgcaccaggcgagccaacgccgtggc
aagccgttcgtggcggtcaactgcgcctcgatcccagagagcctgatcgagagcgagttg
ttcggctatcgcggtgggagtttcactggggcgcgcaaggaaggcatgcgcggcaagctg
cttcaggccgatggcggcaccttgttgctggacgaaatcggagacatgccgttcgccctg
caaacccgcttgctgcgcgtgttggaagagcgccaggtggtgcccatcggcggtgagccc
caggcagtggatgtacgcatcatcagcgccacccaccgagacctgctcgagcgggttgag
cagggctgtttccgcgaagacctttactaccgcctcaacggccttgaagtagcgctgccg
gcggtgcgcgcgcgaagcgacaaagagcagttgctggagttcctgttacgccaggagtcg
caggggcaggtcgtgcaattggcccccgaggcgcgtcaggcattattgggcttcgcctgg
ccggggaacgtgcggcagctgcgcaatgtgctgcgcactctggtggcgctgtgtgacgac
ggccgcatcgaatacctcgatctccctgccatcgtacgcgaaggcgccaccctcgatcgc
gacgttgacgacaccgccgctgagggcggaggcgtgctggcgatgggcgcgccgctgcaa
agtgccgaacgcgacacgctgctggccacattagaggcaaaacactggcacatgacccat
gtcgccgagcatctggggatcagccgcaataccttgtatcgaaaactgcgtaaacacggc
atcgccagggtcgtctga
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