Pseudomonas sp. VLB120: PVLB_22805
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Entry
PVLB_22805 CDS
T02897
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVLB_22805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psv03021
]
PVLB_22805
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_22805
Enzymes [BR:
psv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVLB_22805
Transcription machinery [BR:
psv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVLB_22805
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVLB_22805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AGZ37340
UniProt:
A0AAN0VC67
LinkDB
All DBs
Position
complement(5029171..5030172)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgactccccgtcacattgacgtgcaggtagtcagt
ccaacccgcgccaagattacgctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgctgcgccgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccacgagtactccgcgatcgaaggtgtacaggaagacgtaattgaa
atcctgttgaacctgaaaggtctggctatcaagctgcacggtcgtgacgaagttacgctg
accttgtcgaaaaagggttcgggggtggttaccgctgccgatattcagctggatcacgat
gtcgagatcgtcaaccccgatcacgtaatcgcgaacctggcgtccaacggcgccctgaac
atgaagctcactgtagctcgtggtcgcggttacgagccggccgactctcgtcaaactgac
gaagacgaaagccgcagcattggccgtctccagctggacgcttcgttcagcccggtgcgt
cgtatcgcctacgtggtcgagaacgcccgtgttgaacagcgtaccaacctggacaagctg
gtcattgatctggaaaccaacggcaccctggatcctgaagaggctatccgccgcgctgcg
accatcctgcaacagcagctggccgcgttcgtcgacctcaaaggtgacagcgagcctgtc
gtagtcgagcaggaagacgagatcgatccgatcctgctgcgtccggttgacgacctggaa
ctgactgtacgttcggccaactgcctcaaggcggagaacatctactacatcggcgacctg
attcagcgtaccgaagtagagctgttgaagactcctaacctgggcaagaagtccctgact
gaaatcaaggacgtgctggcctctcgtggtctgtctctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaagacgacaaggcgaccgcctga
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