Pseudomonas sp. VLB120: PVLB_22960
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Entry
PVLB_22960 CDS
T02897
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVLB_22960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psv03021
]
PVLB_22960
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_22960
Enzymes [BR:
psv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVLB_22960
Transcription machinery [BR:
psv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVLB_22960
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVLB_22960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGZ37371
LinkDB
All DBs
Position
complement(5047131..5051330)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEEGITIKRQTDELTGLTNIEVMDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgcggtgtcatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgtcgtgag
cgcatggcccacatcgaactggcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccggatcggcctgctgatggacatgaccctgcgtgatatcgagcgtgttctctac
ttcgagagctatgtcgttatcgacccaggcatgaccacccttgaaaaaggccagctgctg
aacgacgagcagtatttcgaagcgctggaagagttcggcgatgacttcgatgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggttcgggcaacctgcctgagtggatggtcttgacc
gtcctgccagtgctgccgccggacctgcgcccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgtgtggactactctggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgaactgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtcctgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggccttcgaaccggtt
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcactgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtgttcgctgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccggcaggtctgccgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgtgatcttc
gctgaccaactgatgtacaccggtttcgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaggagatcgagagccagtacgcgtccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggcagactccggtgcgcgtggttcggccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgttctgcagtacttcatctcgacccacggtgctcgt
aagggtctggcggatactgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggttgtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgactccgcacatcgaaggcggcgacgttgtagagccgctgggcgagcgcgtattg
ggtcgtgtgattgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtc
gtcgttcgttcgccgatcaactgtgaaacccgctacggcatctgtgccaagtgctacggt
cgcgacctggcgcgtggtcacctggtcaacatcggtgaagctgtcggcgttatcgccgct
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtacaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgatggcaacctggtcgcggtatcgcgttccggc
gagctggccattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gctgtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtcaccgagctgaaaggtaccgtgaccttcgtaggcatg
gaggaaggcatcaccatcaagcgtcagactgacgaattgaccggcctgaccaacatcgaa
gtcatggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggccatcaagatg
gtcgacgcctctggcaaggatctgtacctgccaggtaccgacgtacctgctcagtacttc
ctgccggccaacgccttggttggtgtggctgacggcgcccagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtccaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggcagaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgtcgtctggtcattaccccgacc
gacggtagcgagccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagattcaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtcgagaacgagcgtctcgccagcgaggacaagttcatctcg
aagttcacccgcgtgctgctgggtatcaccaaggcgtcgctctcgaccgagtcgttcatc
tccgcggcttccttccaggaaactacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggctggt
accggtctggcgtaccacagcgagcgtaagcgtcgccgtgatgccgacaagccgctgcgt
gtaagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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