Pseudomonas sp. VLB120: PVLB_24750
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Entry
PVLB_24750 CDS
T02897
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_24750 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psv03021
]
PVLB_24750 (rho)
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_24750 (rho)
Transcription machinery [BR:
psv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PVLB_24750 (rho)
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PVLB_24750 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGZ37729
LinkDB
All DBs
Position
complement(5431720..5432979)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaaacaggacgtgattttcgccctgctgaaa
aagcacgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttcggctgatgcgtcctacctggccggccccgatgacatctac
gtctcgcctagccagatccgccgtttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgtccaccgaaggaaggggagcgttacttcgcgctgctgaaggtcgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagattctgttcgagaacctgacgccgctgttc
cccaacgagcgccttaagatggaagccggcaacggttccaccgaagacctcaccggccgt
gtcatcgacctgtgcgccccgatcggtaaaggccagcgtggcctgatcgtcgctccgccg
aaagcgggtaagacgatcatgctgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccaacccgtcacgtg
caggtggccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcattctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgacgcacatgcccttgagaagccgaagcgcttc
ttcggtgccgcccgtaacatcgaggaaggtggttcgctgaccatcatcgccaccgcgctg
gtagaaaccggctcgaagatggacgaggtgatctacgaagagttcaagggtaccggcaac
atggagcttcccctggaccgtcgtatcgccgagaaacgtgtgttccctgccatcaacatc
aaccgctccggtacccgtcgcgaagagctgctgaccgccgacgacgagttgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgaagtcgctgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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