Pseudomonas sp. VLB120: PVLB_26647
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Entry
PVLB_26647 CDS
T02897
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVLB_26647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psv03019
]
PVLB_26647
03016 Transfer RNA biogenesis [BR:
psv03016
]
PVLB_26647
Enzymes [BR:
psv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PVLB_26647
Messenger RNA biogenesis [BR:
psv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVLB_26647
Transfer RNA biogenesis [BR:
psv03016
]
Prokaryotic type
tRNA degradation factors
PVLB_26647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
DND1_DSRM
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
AGZ38066
LinkDB
All DBs
Position
pSTY:145526..147538
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AA seq
670 aa
AA seq
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MTSPFFVTIDSQKTLDIDDAISITQSGDLYIISVAIADPSAKVGVGSHDDKLAFERAASI
YARDRAVQTMLPRHIGADQSSLVAGQPRQAMVFTITLNSSLEVVGFEPSCQVITVNTRLT
YEAIPEIARSTQSPLREMVELLSRVSTLLLQRRRSKGALALYDIRKLMLSDEEGNLRQYE
SLDQMVGHIIVQEFMILTNSQIALFMAENGLPAVYRNHASRVSAPHALDLANTVEQWLKE
GLVTEASVGAQLGALIERAVYDGVARGHYGLGLTLYLHGTSPLRRYADLVNIRQIRAHLD
NCPLPYSQADLLTISASINKTLRERSESTVDYHKEVLARKAQRLVASGNLVNMEDNVLSA
AVKLAKDAGHLPEAVVAELIRRLNNNTIADAIVDRLAIQIPREAITEDLGVAFSNWMCQH
PHNVVRIIMNGIQTQVFEGLDETVHGVNGGFKCVVAVSASGRRLQGVGVHREKRVAKQKA
MVEILCRHLSLPINSLSPEAPTQSSSSPAPRATDYKGALIELCRKRGWAAPHLHVAMSGP
SNAASFTATATVHPKGGDVESATSPECATKKAAEAAASAILLERLAKSREATSVSSSNPV
VQLNEMAQKNRLAEPSYIFTQLSIAPPQFECVAQIVVDGNVLSAKTVAGGKKVAKELAAA
EILGQVKIAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcaccattcttcgtgaccatcgattcccagaaaacgcttgatatcgacgacgcg
atatcgatcacccagagcggcgatctgtacatcatatcagttgccatcgccgatccttct
gcgaaggttggggtcggctctcatgacgataagttggcgtttgagcgggccgcctcgatc
tatgcccgagatcgtgcagtgcaaacaatgctgccacggcacatcggcgcagatcaaagt
agccttgtcgcggggcaaccacggcaagcgatggtttttacaatcacgctcaatagctcg
cttgaggtcgtcggttttgaacctagctgccaggttatcaccgtcaacacccgtctcaca
tatgaggccattccggagatagcccgaagcactcaaagccctttgcgtgaaatggtggag
ctcctcagtagggtttcgacgctgctgctgcagcgccgccgatcgaaaggagcgcttgcc
ctttacgatattcgcaagctcatgctctcggatgaggagggcaatcttcgccaatacgag
tcgttggatcagatggtcgggcacatcatcgtgcaagaattcatgattctgacgaattcc
caaatagccctcttcatggccgagaatgggctgccggcggtataccgtaaccacgcaagc
cgagtctccgctccgcatgcactggacctggccaacacagtcgagcagtggttgaaagag
gggctggtgaccgaagcctctgtgggtgcgcagttaggggcactcatagagcgtgctgtt
tacgatggcgtggcgcgtgggcattacggtcttggcctaacgctgtacctccacggcacc
tctccgcttcgtcggtatgccgacttggtgaacattcgccagattcgggcgcatctcgac
aattgcccgctgccatattcgcaagcagatctgcttacaatctctgcgtcgatcaacaaa
acgctgcgagagcgatccgaatccactgtcgactaccacaaggaggtgctggcgcggaaa
gctcagcgcttggtggcgagtgggaacctggtcaatatggaggacaacgtactcagcgct
gccgtgaagctcgcgaaagacgccggtcatttgcctgaagctgtagtggctgaattgata
cgaagactcaacaacaacacgatagcggacgccatcgtcgatcgacttgcgattcaaatc
ccaagggaagcaatcaccgaagatcttggggtggctttctcgaactggatgtgccagcac
cctcacaacgtggtcaggatcatcatgaacggaatccagactcaagtttttgaggggctc
gatgaaacggtgcacggtgtaaatggaggcttcaagtgtgtggttgctgtctcggcaagt
gggcggcgtcttcagggagttggtgtgcaccgcgagaagcgtgtagcaaagcagaaagcc
atggtcgagattttgtgtcgtcacttgagtttgcccataaacagccttagccctgaggct
ccgacgcagtcatcaagctctccagcgccccgcgctactgactacaaaggtgcgctaatt
gaactttgccggaagcgggggtgggctgctccccatttgcatgtcgcgatgagtggaccg
tcaaatgctgcaagcttcacagccaccgcgactgtccacccgaagggtggcgacgtcgaa
agtgctacctcaccagagtgtgcaaccaagaaggccgctgaagcagctgcttcggccatc
ctattggagcgactggccaagtcacgtgaggcgacttccgtgagcagctcaaacccggta
gtgcagctaaatgagatggcacaaaaaaacaggctggcggagcccagttacatcttcacc
cagctgagcattgcccctccgcaattcgaatgcgtggcgcaaattgtggtagatggaaat
gtgctttcggccaagacagtggctggaggtaagaaagtcgcgaaagagctagctgctgcc
gaaatccttgggcaagtgaaaatagcgagctga
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