Pseudomonas cremoricolorata: LK03_02560
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Entry
LK03_02560 CDS
T03354
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psw
Pseudomonas cremoricolorata
Pathway
psw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK03_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psw03019
]
LK03_02560
03016 Transfer RNA biogenesis [BR:
psw03016
]
LK03_02560
Enzymes [BR:
psw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LK03_02560
Messenger RNA biogenesis [BR:
psw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK03_02560
Transfer RNA biogenesis [BR:
psw03016
]
Prokaryotic type
tRNA degradation factors
LK03_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
TraK_C
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AIR88190
UniProt:
A0A089WFZ9
LinkDB
All DBs
Position
complement(558213..560318)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKHADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTADAVLMVESEAEELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWKPAVAN
TALFDAIRAEFGEAVSQGYTVTVKADRYARLGELRDQAIAKFSGEEGQPTAAQVKEIFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIATSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKDAAEAARQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSNERV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagacatttcagttcggtcaatcgaccgtcacactagaaaccggc
cgtattgcccgtcaggcaagcggcgctgtgctggtcaccgtcgataacgatgtcaccgtg
ctggtgaccgtggtcggtgccaagcatgccgacccaagcaagggcttcttcccgctgtcg
gtgcactaccaggaaaaaacctacgccgcgggcaagatccccggtggcttcttcaagcgc
gaaggccgtccttcggaaaaagagacgctgacctctcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggtcgtctgcaccgtggtctccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggccgccctggccatc
tccggcattccattcgaaggcccgatcggcgcagcccgtgttgccttccatgaaagcacc
ggctacctgctcaacccgacctacgagcaactggctgcttccagcctggacatggtcgta
gccggtaccgccgacgcggtactgatggtcgagtcggaagccgaagagctgaccgaagat
cagatgctgggcgccgtgctgttcgcccacgacgagttccaggctgtgatcaaggccgtc
aaggaactggctgccgaagccgccaagccgacctgggactggaaacccgccgttgccaac
accgcgctgttcgacgccatccgcgccgagttcggcgaagccgtttcccagggctatacc
gtcaccgtcaaggccgaccgttacgcgcgtctgggcgagctgcgtgaccaggcgatcgcc
aagttctccggcgaagaaggccagccgaccgcggcccaggtcaaagagatcttcggcgaa
atcgaataccgcaccgttcgcgagaacatcgtcaacggcaagccgcgtatcgacggtcgt
gacaccaagaccgtgcgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggcactgttcacccgtggcgaaacccaggccctggtcgtcgcgaccctgggtactgcc
cgtgacgcgcagctgctcgacactctcgaaggcgagaagaaagaccccttcatgctgcac
tacaacttcccgccgttctcggtaggcgagtgtggtcgcatgggcggcgctggccgtcgt
gaaatcggtcacggccgcctggcccgccgttcggttcaggccatgctgccggctgccgac
gtgttcccgtacaccatccgcgtggtctcggaaatcaccgagtccaacggttccagctcc
atggcgtcggtctgcggtgcttccctcgcgctgatggacgccggtgtaccgatgaaggca
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagaagttcgccattctgacc
gacatcctcggtgacgaagaccacctgggcgacatggacttcaaggttgccggtaccgcc
aaaggcgttaccgcactgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gaaatcgccctgggccaggccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcatcgccacgtcgcgtaccgagctgtcggccaacgcaccgaccatgatcgcgatgaag
atcgacaccgacaagattcgtgacgtcatcggcaaaggcggcgcaaccatccgcgccatc
tgcgaagagaccaaagcgtcgatcgacatcgaagacgatggctcgatcaagatcttcggc
gagaccaaggatgcagctgaagcggcgcgtcagcgcgtgctgagcatcaccgccgaagcc
gagatcggcaagatctacgtcggcaaggtagagcgtatcgtcgacttcggtgccttcgtc
aacatcctgcctggcaaggatggcctggtgcacatctcgatgctcagcaacgagcgcgtc
gagaaagtcaccgacatcctgaaggaaggtcaggaagtcgaagtgctggtactggatgtg
gacaaccgcggccgtatcaagctgtcgatcaaggacgtggcggcggcgaaagcttccggc
gtctga
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