Pseudomonas cremoricolorata: LK03_12050
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Entry
LK03_12050 CDS
T03354
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psw
Pseudomonas cremoricolorata
Brite
KEGG Orthology (KO) [BR:
psw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psw03016
]
LK03_12050
Enzymes [BR:
psw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LK03_12050
Transfer RNA biogenesis [BR:
psw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LK03_12050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AIR89983
UniProt:
A0A089YDZ5
LinkDB
All DBs
Position
2713631..2714764
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AA seq
377 aa
AA seq
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MPIEIHWIRDDQALAEHCRHWHELPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
TISNWTPLGELLEDSAVIKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNIGFSMGY
SRLVNEVLGIELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFAALRPRLSADKFAWV
LEDGAELVAQMRREVPPEGLYRDVKLAWKLSRQQLAVLRELCAWREREARSRDVPRSRIL
REQSLWPMAKSQPESLAALARIDDIHPRTLRQDGEHLLKLLKQAGNLPPEDWPPAQPEPL
PIEASGILKRLRAIGQAEGERLGIAPELMLRKKTLEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDDLAGAGDPS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtgcccatcgaaatacactggatccgtgacgatcaggccttggccgaacactgccgacac
tggcacgaactgccgttcgtggccgtcgacaccgagttcatgcgcgtcgataccttctac
cccaaggccgggttgatccagatcggtgacgggcaacgcgcctttctcatcgacccgctg
acgatcagcaattggaccccgcttggcgaactgctggaagactccgcggtgatcaaggtg
ctgcacgcctgcagcgaagacctcgaagtgctgctgcgcctgactggcaagttgccgcaa
ccgctgttcgacacgcaactggcggccggctacctgaacatcggcttctcgatgggttat
tcgcgcctggtcaacgaggtgctcggcatcgagctgcccaagggcgagacacgctccgac
tggttgcagcggccgctttccgacactcaggtcagttacgccgccgaagacgccgtgcac
ctggccgagctgttcgcggcgctgcgtccgcgcctgtcggcggataaattcgcctgggtg
ctggaagatggcgccgagctggtggcgcagatgcgccgtgaagtgcccccggagggcctg
taccgcgacgtcaagctggcctggaagctgtcgcgccagcagttggccgtattacgtgaa
ctgtgcgcctggcgcgagcgcgaggcgcgcagccgcgatgtgccgcgcagccgcatcctg
cgcgagcagtcgctgtggccgatggccaagagccaaccggaaagcctcgccgccctggcc
cgtatcgacgacatccacccgcgcaccttgcgccaggatggcgaacacctgctcaagctg
ctcaagcaggccggcaacctgccccccgaggactggccaccggcgcaacccgagccgctg
cccatcgaagcgtccggcatcctcaagcgcctgcgcgccatcggccaggccgagggcgag
cggctgggcatcgctccggaactgatgctgcgcaagaagaccctcgaagcgctgctcaag
agcggctacccgaacggcccctatcaattgcccgattcgctgcgtggctggcgccgcgag
cgaatgggccaggccctgctcgatgacctggcaggtgccggagacccgtcatga
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