Pseudomonas cremoricolorata: LK03_20960
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Entry
LK03_20960 CDS
T03354
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psw
Pseudomonas cremoricolorata
Pathway
psw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK03_20960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psw03019
]
LK03_20960
03009 Ribosome biogenesis [BR:
psw03009
]
LK03_20960
Enzymes [BR:
psw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LK03_20960
Messenger RNA biogenesis [BR:
psw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LK03_20960
Ribosome biogenesis [BR:
psw03009
]
Prokaryotic type
rRNA processing factors
LK03_20960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIR91578
UniProt:
A0A089YIS5
LinkDB
All DBs
Position
4558315..4561695
Genome browser
AA seq
1126 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRNAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMSPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLSNQSSYEIATSETEEVQPQAATRTLVRQEAAVKTAPPRTSAPVPSTP
EEQPAAPAPVAHVAPEPSLFKGLVKSLVSLFAAKEEPAPAPVASPEKPATNERAQRNEER
RNGRQQSRNRGNRRDEERKPREERSERPAREERQPREERASREERAPREERAPREERAAR
QPREDRRGNREDRPVRELREPLDAAPAAAASREERAPREERAPREERAPRNERAPREERT
PREGREERTPREERAPREGRASREERAPREERAPQEAVVAVSEVVPTEVLSTEVVQNDAA
QVEVAAVTEAPAKQEERAPREERQQRAQREERQPRAVEQAAEASDEQASTEAADESQADQ
DNGDDERPRRRSRGQRRRSNRRERQRNANGELIEGEEEGETQAAASSEQPAQQHQASPLG
AELAAGLAVTAAVASSQVSADAEAQAQQQAERATETVEQTVEAPQAGEASQQAEAASIAP
VVEQVQHEPAAEVVADAVPVVEHAPQRTREAVEAAPAAEGGEIEPAVAAEQPVPATEAVE
AVQAQAVSEPAPAVAAEQAVAARESAVAVPAEAVTESAEQAPAAVESVVEQAPAAEPATV
MLSNGRAPNDPREVRRRKREAEAAAAAAAAQAQADQSIDADKPHHG
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaacccgaagagttgcgtgtagctctggtagat
ggccagcgtctctacgacctggacatcgagtccggcgcccgcgagcagaaaaaggccaat
atctacaaaggccgtatcacccgcatcgagcccagcctcgaagccgccttcgtcgacttc
ggctcggaacgccacggcttcctgcccctcaaggaaatttcccgcgagtacttcaagaag
acccccgaaggccgcgtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagaacgtggcaacaagggtgccgccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgcccaacaacccacgtgccggcggcatctcccgccgt
atcgaaggcgaagagcgcaacgagctgcgtgaggccctcaacggcctgaccgttcccgcc
gacatgggtctgatcgtgcgcactgcaggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcctccctcgaccgcaac
gcgccgttcctgatctatcaggaaagcaacgtgatcatccgcgcgatccgtgactacctg
cgtcaggacattggcgaagtgctgatcgacagcatcgaggcccaggaagaagccctgacc
ttcatccgtcaggtcatgccacagtacgccagcaaggtgaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactcccctccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcacgggccaccaaaggcagcgacatcgaagaaaccgcgctgcagaccaac
ctggaagcagccgaagagatcgcccgtcagttgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgagcccggcgaagaatcaacgcgctgtggaagagcgtgtc
cgtgaggcccttgaagccgaccgtgctcgcgttcaggtcggacgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccttcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctcgggcaccggcatcatccgtgacgtcgagtcgctgtcgctggccatt
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtacgcgcccaggtg
ccgattccggtcgcagctttcctgctcaacgaaaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgagcccgcatcatcatcctgccgaacgatcacctggaaacgccgcacttc
gaagtccagcgcctgcgcgatgacaacccggaagtgctgagcaaccagtccagttacgag
atcgccaccagcgagaccgaagaagttcagccgcaagccgccacgcgcaccctggtgcgg
caggaagctgcggtcaagaccgctccgccacgtaccagtgcgccggtaccgagcactccg
gaagaacagccagccgcccccgcccctgtggcccacgtggcgccagagccaagcctgttc
aaaggcctggtgaagtcgctggtcagcctgttcgccgccaaggaagaacctgcgccggca
ccggtcgccagcccggaaaaaccggccaccaacgagcgtgcacagcgtaacgaagaacgt
cgcaacggccgtcaacagagccgcaatcgcggcaaccgccgcgacgaagagcgcaagccg
cgtgaagagcgcagcgagcgacccgcccgtgaagagcgccagccacgtgaagagcgcgca
tcccgcgaagaacgtgcaccacgtgaagaacgcgcaccgcgtgaagagcgtgcagcccgc
caaccccgcgaagatcgccgtggcaaccgtgaagatcgccccgtgcgcgaactgcgcgag
ccactggacgccgcacctgccgccgcagccagccgcgaagagcgtgcgccacgtgaagaa
cgtgcacctcgcgaagagcgtgcaccgcgtaacgagcgcgccccgcgcgaagaacgcacc
ccgcgcgaaggtcgtgaagaacgcactcctcgcgaagagcgtgcaccgcgtgaaggccgt
gccagccgcgaagaacgcgcacctcgcgaagagcgtgcacctcaggaagccgtcgtcgcc
gtgagcgaagtcgtgccaactgaagtgttgtcgactgaagtcgtacaaaacgacgctgcc
caggtcgaagtagcagccgtcaccgaagcgcctgccaagcaggaagagcgtgcgcctcgc
gaagagcgtcagcaacgtgcccagcgtgaagagcgtcagccgcgcgctgtcgagcaggct
gccgaggccagtgacgagcaagcctctaccgaggccgctgatgagtcccaggccgatcag
gacaacggtgacgacgagcgtccgcgccgtcgctcccgtgggcagcgtcgccgcagcaac
cgccgtgagcgtcagcgcaatgccaatggcgagctgatcgaaggcgaagaggaaggcgaa
acccaagcagcagcctcttccgagcagccggcgcagcagcaccaggcctcgccgctgggc
gccgaactggctgccggcctggcggtcaccgcggcggtcgccagcagccaggtcagcgcc
gacgccgaagcccaggcgcaacagcaagccgagcgcgctaccgaaaccgtcgagcagacc
gtcgaagcgccccaggctggagaagcatcccaacaggctgaagccgcgtccatcgcccct
gtggtcgagcaagtgcagcacgagccggcagccgaggttgtcgccgatgccgttccggtg
gtcgagcatgcgccgcaacgcacccgcgaagcggtagaagcagctccggcagccgaaggc
ggtgagatcgagccagcggtcgcggcagaacagccagtcccagctaccgaggcagtcgag
gcagttcaggcccaggcagtgagcgagccagcacctgcagtggccgctgagcaagcggta
gcggcacgcgagtcggcggtcgcagtccctgccgaggcagtcactgaaagtgccgagcaa
gcgcccgccgccgttgagtcggtggtcgagcaggcacctgccgccgagcctgccacagtg
atgctgtccaatggccgtgcgccgaacgacccacgtgaagtgcgtcgccgcaagcgcgag
gcggaagccgctgcagctgctgccgctgctcaggctcaggctgaccaatcgatcgatgca
gacaaaccgcatcacggttga
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