Pseudomonas cremoricolorata: LK03_21195
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Entry
LK03_21195 CDS
T03354
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psw
Pseudomonas cremoricolorata
Pathway
psw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK03_21195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psw03019
]
LK03_21195
03009 Ribosome biogenesis [BR:
psw03009
]
LK03_21195
Enzymes [BR:
psw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK03_21195
Messenger RNA biogenesis [BR:
psw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK03_21195
Ribosome biogenesis [BR:
psw03009
]
Prokaryotic type
rRNA helicases
LK03_21195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AIR91613
UniProt:
A0A089YIX2
LinkDB
All DBs
Position
complement(4617521..4619185)
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AA seq
554 aa
AA seq
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MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPVLNGIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVKYLVLDEADEMLKLGFMDDLEVIFDAIPET
RQTVLFSATLPSSIRSIAERHLRDPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQLI
ERVTGQKVAEARLPGPQAVLDARIKKLTASLAPLVAESEASHGELLDRLTADLGCSPRAL
ASALLRKATNGQALNLVSVEREQPLVPNGAPRERTERSGERGGERERRAPMPLGEGRVRC
RTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEEGLERLLTKLKDTR
VAGKQLKLRRYRED
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgatctcaatccgaatatcgttgctgcc
gtagtcgctaccggctacgaagagccttcggccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccggtgctcaacggcattgatgtgagcaagcgcgaaccgcaagccctgatcctt
gcgccaacccgtgagttggcgctgcaagtagccacggccttcgaaacctacgccaagcag
atgccaggcgtgaacgtggtggccgtgtatggtggcgccccgatgggcccacagctcaaa
gccatccgcaatggcgcacagatcgtcgtcgccactccgggccgtctgtgcgaccacctg
cgccgcgacgaaaaagtcctgtccacggtcaagtacctggtgctggacgaagccgacgag
atgctcaagctcggcttcatggatgacctggaagtcatcttcgacgccattcccgaaacc
cgtcagaccgtgctgttctcggccaccctgccgtcgtcgatccgttcgatcgccgagcgt
cacctgcgtgaccccaagcacgtcaagatccagagcaagacccagaccgtcaccgccatc
gatcaggctcacctgatggtccacgccgaccagaagatcccggccgtgctgcgtctgctg
gaagtcgaagagttcgatgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgccctggaagccaaaggctacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgagtcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgcggcccgtggtctggacgtgccacgtatcacccacgtgttcaacgtc
gacatgccgtacgaccctgagtcctacgtgcaccgtatcggtcgtactggccgtgccggt
cgcgatggtcgtgcactgttgctggtaacgccgcgcgagcgtcgcatgctgcaactgatc
gagcgtgtcaccgggcagaaggttgccgaagcccgcttgccaggccctcaggccgttctc
gatgcacgcatcaagaagctcaccgccagcctggcgccgctggttgccgagtcggaggcc
agccatggcgaactgctcgaccgcctgaccgccgacctcggctgctcgccacgtgccttg
gcctcggccctgttgcgcaaggccaccaacggtcaggcgctgaacctggtgtcggttgag
cgtgagcaaccactggtgcccaacggtgctccgcgtgagcgtaccgaacgcagcggcgaa
cgcggcggtgagcgtgagcgtcgtgcaccgatgccgctgggcgaaggtcgtgtacgttgc
cggaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggggcgatcctc
aacgagggcggcctggcccgtgacgccatcggccgcatccaggtgcgcgacagcttcagc
ctggtcgagctgccggaggaaggcctggagcgtctgctgaccaagctcaaggacacccgt
gtcgctggcaagcagctcaaactgcgccgttatcgcgaagattga
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