Pseudoliparis swirei (Mariana hadal snailfish): 130187928
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Entry
130187928 CDS
T09868
Symbol
lingo4b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4b isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130187928 (lingo4b)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
130187928 (lingo4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
I-set
Ig_3
LRR_9
LRR_6
ig
Ig_2
LRR_Zer-1
C2-set_2
Motif
Other DBs
NCBI-GeneID:
130187928
NCBI-ProteinID:
XP_056261882
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All DBs
Position
22:complement(2613631..2629342)
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AA seq
613 aa
AA seq
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MRAAPPRRGGKMLAGSVVRWGVWSLLIQFGPGASAAGCPLRCACRPEAGDVVCSGRHLSS
APDGLSGDARRLDLSRNKIKTVGRRQFSGLPRLQELDLSDNVISVIEVEAFQGLQNLRTL
RIKNNRLKIIPVGVFSGLPGLRLLDLSQNEILVFLDYTFKELANLQTLEVEENDLVFISQ
RAFVGLQNLQELNLDRSNLTSVPSEALSRLQGLTRLRLLRLAVSTLPGNAFRRLHRLRSL
LIANWPALDAVASDSLMGLNLTSLAINSCNLSAVPYSALRHLAYLRYLDLSYNPITAIQG
NLLGDLLRLQELHLAGGSLLRIEPGAFRGLAHFRTLNVTSNRLATLEESVFHSVGNLQVL
RLDGNPLACDCRLLWVVRRRLRLNFDGSQPACSSPDAARRREFRDFSEKELPGLFACRPA
RVTDRRPQEARVEEGATVAFSCNADGDPLPSITWISSQRNVVASTGRIRALPDGTLEVRF
AQVQDSGTFRCLAGNAAGNDSLTVGLHVKGLARNRTAPFFWDEGWVEPSSSQAANSSAQM
SKPYPFDAKTLVIATTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDFVPRSSMGGG
DGADGGRFTMKLI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagagcagctccaccacgtcgggggggtaagatgttggcgggctcggtggtccgatgg
ggagtctggagcctcctgatccagttcggcccgggtgcgtccgccgccggttgtcctctg
cgctgcgcctgccgaccggaggccggagacgtcgtctgctccggccgacacttgagctcg
gcgccggacggcctctccggcgacgcccgccgtttggacttatctcgcaacaagatcaag
accgtcgggcggcgccagttctccggcctcccgcgactccaagagctggatctcagcgat
aacgtgatctccgtgatcgaggtggaggccttccagggcctgcagaacctccggacgctc
cggattaagaacaaccggctgaagatcattcccgtcggggtgttttctggccttcccggt
ctgcggcttctggatctgagccagaacgagattctggtgttcctggactacaccttcaaa
gagctggcgaacctgcagacgctggaggtggaggagaacgacctggtcttcatctcccag
agggcgttcgtcggcctgcagaacctgcaggagctgaacctggaccgcagcaacctgacg
tcggttcccagcgaggcgctgtcccgcctccagggcctgacgcgcctccgcctgctgcgc
ctcgccgtctccacgttgcccggcaacgccttccggcggctccaccgcctgcggagcctc
ctgatcgccaactggccggccttggacgccgtggcgagcgacagcctgatgggcctcaac
ctgacgtcgctcgccatcaacagctgcaacctgagcgccgtcccttactcggcgctccgc
cacctggcgtacctgcgctacctggacctgtcctacaaccccatcaccgcgatccagggc
aatctgctcggggacctcctgagactccaggagttacacctagccgggggcagcctgctc
cgaatagagccgggcgccttcagggggctggcccacttccgcacgctgaacgtcacgtcc
aatcggctcgccactttggaggagagcgtcttccactccgtggggaaccttcaggtgctg
cgcctggacgggaaccccttggcgtgcgactgccggctcctgtgggtcgtccgtcgccgg
ctgcgcctgaacttcgacgggagtcagcccgcctgctcgtcgcccgacgccgcgcggcgc
cgcgagttccgagacttctccgagaaggagctccccgggctgttcgcgtgccggccggcc
cgcgtcacggaccgccggccgcaggaggcgcgggtggaggagggcgccacggtcgcgttc
tcctgcaacgccgacggggatccgctcccgtccatcacctggatctcgtcccagaggaac
gtcgtcgcttccacgggacgcatccgagcgttgcccgacggcactctggaggtgcgcttc
gcccaggtgcaggacagcggcaccttccggtgcctggcgggcaacgccgccggcaacgac
agcctcaccgtcggcctgcacgtcaagggcctcgcccgcaaccggaccgcgcccttcttc
tgggacgagggctgggtggagccctcgagctcccaggccgccaactcctcggctcagatg
tccaagccgtacccgttcgacgccaagaccctggtgatcgccaccaccatgggcttcctg
tccttcctcagctcggtggccatctgcttcgtcttcatgttcttctggagccagagcaaa
gggcagatcaagcacacggcgaccatcgactttgtgccgcggtcttcgatgggcggcggc
gacggagcggacggcggcaggttcaccatgaagctcatttga
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