Pseudoliparis swirei (Mariana hadal snailfish): 130187999
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Entry
130187999 CDS
T09868
Symbol
cdh17
Name
(RefSeq) cadherin-17
KO
K06811
cadherin 17, LI cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130187999 (cdh17)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130187999 (cdh17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
RET_CLD1
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
Big_5
Motif
Other DBs
NCBI-GeneID:
130187999
NCBI-ProteinID:
XP_056261999
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All DBs
Position
22:complement(12357687..12369417)
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AA seq
870 aa
AA seq
DB search
MTPMIHLLLVPLLFSIAGGKDLEEKKGPLENTELDVPEGTPVPYAIYQFQVTHPEVNSFR
LSGEGQADIKISKDGWLYLELPLDWAREDHYIILVEALADDEVVEGPVHVTINVLDVNNN
APFFNQSVYTAVVRENNPAGIPFTRVFALDQDDPETPNAHLSYSLVSQIPNHQHIALFQI
DPNTGEISTTEAGTQMLKAREGIRYARGEDQSLDALRIKFNDYCPVQNIPFEENPFFTCV
ERAEKRRRNMDPLDDPDYTLIVRVQDLGGASQAALSGNTRVHIVVQQNLWVNPGPVTVRE
HLKETYPLVIAKVQSNEPNAVYSLVQKERELKFPFQITEDGEIHLTEELDREEKDMYVLV
VFAVDHEDKQVDPPMEIQVLVEDVNDNAPVCADEESVFEVQEHEPVGSLIGQLLAHDDDQ
VGTLNSQLTFTIVSQNPLTSPDAFAIDAASGRIQALRVLQRRDHQAYDLNVRVTDLVFST
ECKVVVKVIDVNNEMPLFEKKDYDSPPLAEDTPVGHTVLSVRATDADDPDSGSSLINFHI
SAGDDEGIFAVESDGNGVGHLVVVKPLDFESSATYKIQIDARNPEPLMTGLEYGGESTAF
VSVSLTDVDEAPEFSLDILDVTVPENTTKGSVLLTVEAKDPEGKEISFRMDGDTRGWLQI
DAATGEIRTRDKLDRETIESFEVTVTAFEKENPSQLSERVVSVRLLDVNDNFPILMETQA
FICVKKPEPITLKAQDSDSAPFSGPFTFAFAHGKKSPNWELKSVDGTTATLTLKKTPSED
KTFTIPINIKDNAGMGVTQSFEVRVCSCTELGYCYMAPVERSLGYGIGATVGILGGTLGF
CLIVFFIVIRKKKEEKKTNQTEEEERNAIM
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgacacccatgatacatctgttgctggtcccactcctgttcagcattgctggagggaag
gatctagaggaaaagaagggcccgttggagaacacagagctggatgtgccagaggggaca
ccggtgccatatgccatctatcagtttcaggtgacccatccggaagttaatagtttcagg
ttgagtggagaaggtcaggcagacattaagatttcaaaggacggttggctgtacctggag
ttgcccctggactgggctcgagaagaccattacatcatcttggttgaggcgctggcagac
gatgaagttgtggaaggcccagttcatgtgacaataaatgtgttggacgtcaacaacaac
gctccattcttcaaccagagcgtctacaccgctgttgtcagagaaaacaatccagcgggt
atcccatttactcgcgtctttgcgttggatcaggacgacccagagactcccaacgctcat
ctgagctacagcctggtcagccagatccccaaccaccagcacatcgccctgtttcagatc
gaccccaacactggagagatctccaccacagaagcagggacacagatgcttaaagccaga
gaaggcatccggtacgccagaggagaagatcaaagccttgatgctctgaggataaagttt
aacgattactgtccagtgcagaacatcccctttgaagaaaaccccttcttcacctgtgtg
gagcgagcagaaaagaggaggaggaatatggaccccctggatgacccagactacaccctc
attgtgcgcgttcaggacctgggaggagcttcgcaggccgcgctgagtggaaacaccaga
gtgcacattgtcgtgcagcaaaacctgtgggtcaatcctggacctgtaacagtcagagag
cacttaaaggaaacgtaccctctggtcatcgcaaaggtccagtccaatgagcccaacgcc
gtgtactcgttggtgcagaaagaacgagagctgaagttccccttccagatcacagaagat
ggagaaatacatctgacagaggagctggacagagaagagaaagacatgtacgtcctcgtg
gtgtttgcagtagatcacgaggacaaacaggtggatccacccatggagatccaagtcttg
gtggaggacgtgaacgacaacgccccagtgtgtgcagatgaggagagtgtttttgaggtg
caggaacacgagcctgtaggcagcctaatcggacaactgttggcccatgatgacgatcaa
gtcgggacactgaactctcagctgactttcaccatcgtgtcccaaaatccgctcacctca
cccgacgccttcgccatcgacgctgcttctggaagaatccaggccctgcgcgtgttgcag
cgaagagaccaccaggcgtacgacctcaacgtcagagtcaccgacctagttttcagcaca
gaatgtaaggtcgtcgtcaaggtcatcgacgtcaacaacgagatgcctctgttcgagaag
aaggattacgacagtccccctctggcagaggacactcccgtgggacacacggtgctgagc
gtcagagccacggacgctgatgacccagacagcggcagctccctgatcaacttccacatc
tctgccggcgacgacgagggaatttttgctgtggagagcgacggcaacggcgtcggccat
ctggtcgtagttaagcctctagacttcgagtcctctgcaacctacaagatccagattgat
gctcgtaacccagagccgctgatgacgggtctggagtacggcggcgagtccacggccttc
gtctctgtgtctctcacagacgtagacgaggctccagagttcagtctggacatcctggat
gtgactgtgcctgaaaacaccaccaagggctcagtgctgctcactgtggaggcgaaggac
cccgagggcaaagagatcagttttaggatggacggtgacactcgcggctggctgcagatc
gatgctgccacaggagagatcaggaccagagacaagttggacagagagaccattgagtct
tttgaagtcaccgtcactgcgtttgagaaggagaacccgtcgcagctgtctgagcgagtc
gtttctgtgaggctgctggatgtgaacgacaacttccccatactgatggagacccaggcc
ttcatctgtgtgaagaaacctgaaccgatcaccctcaaggcccaagactcggacagcgca
cccttctccgggcccttcaccttcgctttcgctcatggaaagaaatctcccaactgggaa
ctgaaaagcgttgacggtacaacagctacactgaccctgaagaaaacaccatcagaagat
aaaaccttcacaatccccattaatattaaagacaatgccggcatgggagtcacacagtcg
tttgaggtgagagtctgtagctgcacagagctcggctactgctacatggcacccgttgag
cgtagcctcggttatgggataggagccaccgtcggtatcctgggtggcactctgggattc
tgccttattgttttcttcatagtgatcagaaaaaaaaaggaggagaagaagacgaaccag
actgaagaagaagagaggaacgcaattatgtag
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