Pseudoliparis swirei (Mariana hadal snailfish): 130188146
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Entry
130188146 CDS
T09868
Symbol
utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130188146 (utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130188146 (utp18)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130188146 (utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40
WDR55
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_NOL10_N
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_Vps41
B-prop_COPA_B_2nd
Beta-prop_IFT122_1st
Beta-prop_VPS8
Cytochrom_D1
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_NWD2_C
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
130188146
NCBI-ProteinID:
XP_056262279
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Position
23:complement(891489..912918)
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AA seq
526 aa
AA seq
DB search
MKDLIQLPAAEEERGPAKKRTRTPRPDPGDEEEQRRTHVKRLSALGERDGSVKLLEELVF
GAEDELLERLVEGSTREDQEPAGASLVEEPVDGSGDSEDEDEAPPPASRAAVWVDEDDER
EEEVDMTHRYRRDLIRGEAESTMTNQKLQQRMREQFQKAMGGAPSWAEKRRKKKKKDEDE
EDEEEELLRRTGNFVVSSDRLPGSVLRMKKCLHANGSRPSLDRLTTVQFHPVAQVVMTAG
LDQSVSLFQVDGKTNPKIQSIHLERFPVHRARFSRDGDTVIATGLKNKTFYLYDMREGRV
TPVHTVRGLNEARVKEFSVCPEGGALLLTGTRGYLHLLTLKTKEVVRSMKVNGAVVGVAF
SHDGSKVFANSEDGEVYVWDMRSSRCVNRFTDEGCVKATAIAASPNGQYLACSSQSGVVN
VYSQEACLNLANPKPLKAVMNLLTSATSMTFNPSSEILAIASRDEDEAVRLVHMSSLSVF
SNFPVSKRKSIYRTSCLDFSPHSGFFSLANNKGHAPLYRLLHYKDF
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacttgattcagctgccggcggcggaggaggagcggggacccgccaagaagagg
acccggaccccgaggcccgaccccggggacgaggaggagcagcggcggactcacgtgaag
aggctgtcggccctgggcgagcgggacggctccgtgaagctgctcgaggagctcgtgttc
ggggcggaggacgagctgctggagcgcctcgtggagggctccacccgggaggaccaggag
ccggctggagcctcattggtggaggagccagtggatgggtcaggtgactcagaggatgaa
gacgaggctcctcctcctgcgagcagagcggccgtctgggtggacgaggatgacgagcgg
gaggaagaggtggacatgacgcaccgttaccgtagagacctgatcagaggggaggcggag
tccaccatgaccaatcagaagctccagcagaggatgagggagcagttccagaaggcgatg
ggaggagctccatcgtgggccgagaagaggaggaagaagaagaagaaagatgaggatgaa
gaggatgaagaggaggagctgctgaggaggacggggaacttcgtggtttcttcagaccgt
ttgccgggcagcgtcttgagaatgaagaagtgtcttcatgctaacggctcgcggccgtcg
ttggaccgactgaccaccgtgcagttccatcccgtcgctcaggtcgtcatgacggccggc
ctcgaccaatcggtgtccctctttcaggtggacgggaagacgaacccaaagatccagagc
atccacctggagcggttccccgtccacagagcccgcttcagccgggacggagacacggtg
atcgctaccggcctgaagaacaagaccttctacctgtacgacatgagggagggccgcgtc
acacctgtgcacacggtgcgaggtctgaatgaagcgcgagtgaaggagttctcagtttgt
cctgaaggaggcgctttgctgctcactggaacgagaggatacctgcacctcctcacactc
aagacgaaggaggtggtccgcagcatgaaggtcaacggcgccgttgtgggcgtggccttc
tctcacgacggcagcaaagtgtttgccaactcagaggacggggaggtgtatgtgtgggac
atgcgcagcagtcggtgtgtgaacaggtttacagatgaaggctgcgtgaaggcgacggcc
atcgccgcctcccccaacggacaatacctggcctgcagctctcagtcgggtgtggtcaac
gtctactcccaggaggcgtgtcttaatctggccaatcccaagcctctgaaagcagtgatg
aacctgctgacctctgcgacctcgatgaccttcaacccgtcgtctgagatcctggccatc
gcctcccgagacgaggacgaggctgtgcgcctggtccacatgtccagcctcagcgtcttc
tctaacttccccgtctccaagaggaagagtatttatcgaaccagctgcctggacttctcc
cctcacagcggcttcttctcattggccaacaacaaaggacacgcccctctgtacaggttg
ctccactacaaggacttctga
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integrated database retrieval system
