Pseudoliparis swirei (Mariana hadal snailfish): 130188152
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Entry
130188152 CDS
T09868
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130188152 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
130188152 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188152 (thoc6)
03041 Spliceosome [BR:
pswi03041
]
130188152 (thoc6)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130188152 (thoc6)
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130188152 (thoc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_Gbeta
NBCH_WD40
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IP5PC_F
Beta-prop_WDR36-Utp21_1st
WDR54
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WD40_like
EIF3I
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
130188152
NCBI-ProteinID:
XP_056262292
LinkDB
All DBs
Position
23:complement(965854..979396)
Genome browser
AA seq
328 aa
AA seq
DB search
MGPVERLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSAALSPDATPLSQKPVLRFTAHE
GPVYSMLSTDCQLLSSGNGEISCWSWSELIKKNVKSLWTKRPKYKSSLEIPEINSMSMNL
RDNSLVFGGGDNNVHILDLEHGVFKSVLQGHTDYIHCVSVRDREAEILSGGEDGAVRMWV
LFSADSRTGQSVHCIEIHKYESCARPQFGKWISCLTTDSDWMLCGGGPSLSLWHLRSLSP
TSVFPLKGVQRQTSFYQDMILAVGEGPSVSHCLLGGEVKAQIPCSPQSLNTLQLNTSSTE
HRVLTVGGSSDLIDVFTNLSYRTFSLSF
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgggccccgtcgagcgcctccacatgtcggtgttctcccagagcttctccccctgtggg
cgcttcctggcagcaggaaacaactacggagagatcgccgtgttcagcctgtctgcggcg
ctgagccccgacgccacgccgctgagccagaagccggtcctcaggttcacagcccatgag
ggtcccgtgtactcgatgctctccactgactgccagctgctcagctcggggaacggagag
atcagctgctggagctggagcgagctcatcaagaagaacgttaaatctttgtggacaaaa
agaccaaaatacaagtccagtctggagatccctgagatcaactccatgtccatgaacctc
agagacaacagtctggtctttggcggaggagacaacaacgtccacatcctggacctggag
catggagtcttcaagtccgtcctgcagggccacacggactacatccactgcgtgagcgtg
agggaccgcgaggccgagatcctgtcggggggcgaggacggcgccgtgaggatgtgggtt
ctattctctgcagacagcagaaccggtcagtctgttcactgcattgagatccacaaatac
gagagttgtgctcgtcctcagtttggtaaatggatcagctgtttgaccaccgactctgac
tggatgctgtgtggtggaggtccgtctctgtctctgtggcatctccgctctctgtctccg
acctccgtcttccctctgaagggcgtccagagacagacctccttctaccaggacatgatc
ctggcggtgggtgagggcccctctgtgtctcactgtctgctgggtggggaggtgaaggct
cagatcccgtgttctcctcagagcctcaacacgctgcagctcaacaccagcagcacggag
caccgggtcctcacagtcggcggtagcagcgacctcatcgacgtgttcaccaacctgtcc
tacaggaccttctccctcagcttctga
DBGET
integrated database retrieval system
