Pseudoliparis swirei (Mariana hadal snailfish): 130188185
Help
Entry
130188185 CDS
T09868
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188185
03036 Chromosome and associated proteins [BR:
pswi03036
]
130188185
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130188185
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130188185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130188185
NCBI-ProteinID:
XP_056262339
LinkDB
All DBs
Position
23:4651033..4706064
Genome browser
AA seq
1829 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYETSPWSSGSPCSSDGNSNWSKVLVDGSADKPNNP
SSTNSSVWPPSFSCSSSSSSSGCGSGSDPELASECMDADSSSSVGSEKNLAAVTTVMMMS
ANASSSVSSAASSPSSAMMVVVSVNGDSNGNSRQVIGGGIGTIGGANNGNNITGSSHYVT
GSSSIGSNNHNNKPVNNSGVWGSNVIPTGGSSPCINGGLNPNTLNPNANHGAWPQSPSPA
SQGQRAPQAQGMSSKLGLAPQQSPVLGWGGKAAPNGSITMEDVEVNNGTASSKVLGSSNS
GNDGLQPTNLNTESNGPNNTMMMNTTTTTTTNDTMTSSPPNSTASPQLSGDCSWGSVGGG
NGVPLANGNSSSAAQHPQGELGGPGAFGTPWGATTYPGDKGTPNADTVNPPNPAAMQAGN
PQIPSTAAYKSNNNHNSMLAPRWDQGPASNPNQPQSNWGLGSNKIPGSAGQTPGKGNQTT
MGPPAGVPRPWGSSASSSSSSSSSSCASNNKTSNGEWRSVPPGNNHTDPGSHKVSSANNG
WKSLEDDAMGMGGGGGGGGGGGGAGGGGGGGGVGGVGSGAVGSNALRSVTGGWGRTGGSE
GSAESSGGQSSSDKDASQPKGGNRRKVVDPPTPVPAVPQSDVDPRVLSNTGWGQTPIRQN
TSWDVNFSANHRLQGPKGDERKHSSGSGWGTATPAAPSQTSGGCGGGPGNSGPGGSNWGE
RNTSGGGGQSSWNDGSSYRGNNSSSNSNTWSNNANKDDRSNTWTNAPKPQQGWGSNGGNG
SDRWGNGGDGARAGGKNHWGEPQKGGDGNRSGSGCWNESSRTNTSSSNTWGGSGGSNPQD
QSTPNPNPGSNWGDSAHKPNPQSNGQGWGEPTKNNNGAQNWDEQNPKPSNEWGKGPESNM
SRGNQGPDKPSGWQGGPMPAGGVKEEVSTGWEEPSPESVRRRTEIDDGTAAWGEPGKRSG
GAVHMRNRSGQSEQEPVGPSAQHQAHPAARNSMPPPPHPPPQPMQTHAQDKSCSSTWGEP
FPQKESSTWEPAPAPPVKVDNGTSAWGKPMDTSSTWEDPNRETREPGPGWNGQHKSAPGP
KPMETWGGEEASMGNSWDQEEEVEIGMWSNSQQDNRSHDQSTWSYKHRCSNKMNKPVNKQ
DEPWMKPFINQFNSMNFPRDSPDDSMKTGAGMVQDKRMDMGGMGDYNGVMGKNPGSRHQL
HKDSPMDRSPCYEKNVNPMMGGSSVAQGRGGPQSQVPPQPNLRNQVPPPILPPQVPPSLL
KYPGGNGGLNPLFGPQQVAVLNQLTQLNQFSQLSQLNQISQLQRLLFQQQQQQQQQQQQK
AQIQRPVGRPTEQTRPIGSSPSMMQPPRHLDPSMLKQAPPHKPYLDNYMSHNTPEMQKEA
AALGSFSNFPLSLNSNLNVPMDMGGGGGGNAVGYKEPQSRLKKLWATDPLEQNSKPGAMS
SGLRLEDSPFYDFLSPGPSPLSPPGQSMGSVGDGWPPRANSPLPHGNSVAWPPEFRPGEP
WKGYPNIDPETDPYMTPGSVINSLSINTVRDTDHLRDRNNGPSSSLNTTMPSNSAWSSIR
ASSHSGSLTSTAQSTSARPSESKWSPGGGSVSNSSLAHELWKVPLPPKALAVAAPSRPPP
GLTSQKPSSASSGWGASESRYTPGSSWGDSSSSGRSQWLVLRNLTPQIDGSTLRTLCMQH
GPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTIVAEIASEEEINRFFAQGQ
SLATPSSGWQAISSSQSRMDQSHTFPSRAPEPNQWNGSDLHSSSLWGGPNYSSSLWGNPG
GTEAGRLSSPSPISSFLPVDHLTGGGDSM
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactccgtcagccactcccctaatcaaacaggtctggagcaccct
ggcttggactcgcagtatgagacttccccctggtcctctggctctccctgcagcagcgac
ggcaacagcaactggagcaaagtcctagtggacgggagcgccgacaaacccaacaacccg
tcttcaaccaactcttccgtttggcctccttcgttctcttgctcctcctcgtcttcctct
tctggctgcgggtccggatcggaccccgagttggcttcagaatgcatggacgcagactct
agctcctcggtcggctcggagaaaaacctcgccgctgtgacaacggtgatgatgatgtca
gcaaatgcttcctcctctgtgtcttctgcggcctcttctccctcctctgccatgatggtc
gtcgtttcagtgaacggagacagcaacgggaacagccgtcaggtaataggcggagggatc
ggaaccatcggcggtgcaaataatggaaataacatcaccgggtcctcccactatgtgacc
ggatccagcagtattggcagcaataaccacaacaacaagcccgtcaataatagtggtgta
tggggcagcaacgtgatcccaacaggcggcagcagcccctgcatcaacggagggttaaat
ccaaacactttaaacccaaatgccaaccacggtgcctggccgcagagcccgagcccagcg
tcccagggccaacgggccccacaggctcaggggatgagttccaaactaggcctagctccc
caacagagccccgtgctgggctgggggggcaaggcagcgccaaacggcagcattacgatg
gaagatgttgaggtgaataatggtacagcgagcagcaaggtgttaggaagcagcaacagt
ggaaatgatggcctacagccgaccaaccttaacactgaatccaatggaccaaataacact
atgatgatgaatactactacgacgactactactaacgacactatgacctctagtccacca
aactctaccgcctcaccccagctcagcggggactgctcctggggctctgttggaggaggg
aacggggttccgctggccaatggaaactcctcatcagccgcccagcacccccaaggagaa
ctgggcggtcccggggccttcggtacaccttggggtgcaactacctaccctggagacaaa
ggcaccccaaatgcagacactgtgaaccccccaaaccctgccgcaatgcaggctgggaac
ccccaaataccctctactgctgcttacaagagtaataataaccacaatagcatgctggcc
ccacgctgggaccaggggcccgccagtaatccaaaccagccccagagcaactggggtctc
ggctccaataaaatcccaggttctgcaggccaaacgccaggaaaggggaaccaaactacg
atgggccctccagcaggggtacctcgcccttgggggagcagcgcatcgtcctcttcctcg
tcatcgtcgtcctcttgtgcatctaacaacaagacgtcaaatggagaatggaggtcggtt
cctcctggtaacaaccacacagatcctggaagtcataaagtaagctctgccaacaatggc
tggaagagcctggaggatgacgccatgggcatggggggagggggaggaggaggaggaggg
gggggaggagcggggggaggtgggggaggtgggggagttgggggagttggaagtggagca
gttggaagcaacgccctgaggagtgtcactggaggctggggtcgcaccggagggagtgag
ggaagcgcagagagctccggaggccaatccagctccgacaaagacgccagccagccaaaa
ggaggaaatcgaaggaaggtcgtcgatcctccaacaccggtaccggctgtcccccagtcc
gacgtggacccgagggttctgtccaacaccggatggggacagacgcccatacggcagaac
acctcctgggatgtcaatttttctgccaaccacagactccaaggacccaaaggagacgaa
agaaagcacagcagcggctccggatggggcacggcaacaccggcagcgccctcccaaacc
tccggaggttgtggtggtgggccgggcaactcgggcccaggaggttctaactggggagag
cggaacacttctggtggaggtggacagagcagctggaacgatggctccagctacaggggg
aacaacagcagcagcaacagtaacacctggagcaataacgcaaacaaagatgaccggtcc
aatacgtggactaatgcgcccaaaccgcagcagggctggggttccaacggtggaaatggc
agcgatcgctggggtaacggtggagatggcgcccgagcagggggcaaaaaccactggggg
gagcctcagaaaggtggcgacggcaaccggtccggctctggatgttggaacgagtcaagc
cgaaccaacaccagcagcagcaacacctggggagggagcggaggatcaaatcctcaagac
cagagcaccccgaacccgaacccgggctccaactggggcgactcggcccacaaacccaat
cctcagagtaacggccagggctggggagagccaacaaagaacaacaacggagcccagaac
tgggacgagcagaatcctaagccctccaacgagtgggggaaaggtcccgaatccaacatg
tctcgaggcaatcaaggccccgacaagccctcaggctggcaaggaggccccatgcccgca
ggaggcgtgaaggaggaagtgtcaactgggtgggaggagccttctcccgagtccgttcgg
cgacggacggagatcgacgatgggactgcagcttggggagaacccggtaaacgcagcggt
ggagccgtccacatgaggaacaggtctggccaatcggagcaggagcccgtgggcccgtcc
gctcagcaccaggcccacccggcggcacgcaactcgatgcctcctcctcctcaccctcct
cctcaacccatgcagactcatgcccaagacaaaagctgcagttccacttggggtgagcct
ttcccccagaaggagtcctctacgtgggaacctgctcccgctccacctgttaaagtggac
aatgggacgtctgcctgggggaagcccatggacaccagctccacctgggaagaccccaac
agggagacccgagagcccgggcccgggtggaacggccagcataagtctgctccaggtccc
aagcccatggagacatggggtggagaggaggcgtccatgggcaatagctgggaccaggaa
gaggaggtggagattggcatgtggagcaacagccagcaagacaacaggtctcatgaccaa
agcacctggagctacaagcatagatgctcaaacaagatgaacaaaccagtcaacaaacag
gatgaaccctggatgaaacccttcatcaaccagttcaacagcatgaacttccctagagac
tctcccgacgactccatgaagaccggagcagggatggtgcaggacaagcgcatggacatg
ggcggcatgggcgactacaacggagtcatggggaagaaccccgggtctcggcaccagctc
cacaaggattctcccatggaccgcagcccttgctatgaaaagaatgtaaaccccatgatg
ggcggcagcagcgtagcacagggccgaggcggcccccagtcccaggtccccccccaaccc
aacctccgtaaccaagtgcctccccccatcctgccccctcaggtgcctccatccctgttg
aagtacccaggaggtaacggaggtctgaaccctctgtttggccctcagcaggtggctgtg
ctcaaccaactcacccagctcaaccagttcagccagctgtcacagctcaaccagatcagc
cagttacagcgtcttctcttccagcagcagcaacaacaacaacaacagcagcaacagaaa
gctcagatccagaggcctgtgggacgaccgactgaacagacgcgtcctatcggttcgtct
ccatccatgatgcagccgccgcggcacctggacccctccatgctgaaacaggccccgccg
cacaaaccgtacctggataactacatgtcccacaacacccctgagatgcagaaggaagct
gctgctctcggatccttcagcaatttccctttaagcttgaactctaacctgaatgtaccc
atggacatgggcggcggcggtggtggcaacgccgtgggctacaaagagccccagtccaga
ctgaagaaactttgggctactgaccctctggagcagaacagcaaacctggtgctatgtcg
tctgggctgcgtctggaggactctcccttctatgacttcctgtcccccggcccatctccc
ctgagtcctcccggccaatcaatgggctcggtgggcgatggctggccgccccgtgccaac
tcccccctgccccatggaaactctgtcgcctggcccccagagttccggcccggagagccg
tggaaaggttaccccaacattgaccccgagaccgacccgtacatgacccccggcagtgtc
atcaactccctctccatcaacaccgtccgtgacacagaccacctcagggacaggaacaac
gggccatcctcatcactgaacaccacgatgccttctaacagtgcctggtcatccattcgt
gcctccagccacagcggttccctcaccagtacagcacaaagcacttcagccagacccagt
gagtcaaagtggtctcccggcggcggttctgtgtccaactcctccctggcccacgagctg
tggaaggtccccctgcctcccaaggcgctcgccgtggcggccccctccagaccaccaccc
ggcctcaccagccagaagcccagctctgcctcctccgggtggggcgcctccgagtccaga
tacacacctggctccagttggggcgacagcagcagctcggggagaagccaatggctggtc
ctgaggaatctcacacctcagatcgacggctccaccctgaggaccttgtgcatgcagcac
ggccctctgatcacattccacctcaacctgccgcacggtaacgccgtggtatgctacagc
tccaaggacgaggccgcgaaggcccagaagagcctgcacatgtgtgttttggggaacact
acgattgtggccgagattgccagcgaggaggaaatcaaccgattctttgcacaagggcag
tcattggccactccctcctccggctggcaggccatcagctcctcccagagcagaatggat
cagtctcacacctttcccagccgcgctcccgaacccaaccagtggaacggcagcgatctc
cacagctcctccctctggggcgggcccaactattccagtagcctgtgggggaaccccggt
ggcaccgaggcagggaggcttagcagcccttctccaatcagctccttcctcccggtggat
cacctgacgggcggcggggactccatgtga
DBGET
integrated database retrieval system
