Pseudoliparis swirei (Mariana hadal snailfish): 130188438
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Entry
130188438 CDS
T09868
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130188438 (casc3)
03015 mRNA surveillance pathway
130188438 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188438 (casc3)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130188438 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
130188438
NCBI-ProteinID:
XP_056262786
LinkDB
All DBs
Position
23:complement(1364654..1386187)
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AA seq
758 aa
AA seq
DB search
MADRRRRRRRASQDSDDDDESGSGSDSGRSGSPTNKSRVKDPDPPEETATRVEPKVKAES
ECESEDGVGEAVLSDLRLHTQENGSPVPGAEEEEEAEQFSDEEAPPAAEPEPPAAHDPTK
LEEVQEEQQQEEEEQQEEEEEGQQQEEEELEEELVVLEEEEQEGKEVQEEEGGHGKEENK
TEEKENLSGERQSGDGQESTDDPESRLPVSPGQKLDDDEDRKNPAYIPRKGLFFEHDVRG
HAQEEERPKGQNRRLWKEEGRWDHDKFREEEQAPKSREELIAIYGYDIRNGGGSSERPYR
QRQPRQSTSPRGEQRWRDGGERPVRPWQGGGGAPPSHSHPSSPSSSLLLSSAQRNNPSSL
PPPRSRPPPHTLSAQYRNNESNAPPPHPRDRQGPKAAPEPSGDRGGGRGLSGGPRDPGPG
VGAAPPGGYRSASPRRQQQDRRGGGDGPPSGSAACDPARRSPATNREASPPAERPMERKS
YALARRTRARPADLGSKQASVEETASPSGGGGKSWAEDGPDQEGGGGGGGGGGGGGGANL
EEPEEDLARLSLTEQTWSPSPPSYFRSEMRGLPSSPPQFPNMEEMAVGSSRAKRYSSQRQ
RAGPEPAPPLHLGVMEGHYYEPMSYQGPIYAHGDGPAPIPPQGMLVQPEMHLPHPGLHPH
QSGGPIPSPALYGGPPVSLPPGQPQQLLPPPFYPPPGVMTFPYPAMYPAPQAQAQVTYGG
VTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPELHFVSE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgatgacgacgatgag
tccggctcgggttcggacagtggtcggtccgggtccccgaccaacaagagccgcgtgaag
gacccggacccgccagaggagaccgcgacccgggtcgagcccaaagtcaaggcggagtcc
gagtgtgagagtgaagacggagtcggagaagccgtcctctcagacctcagactacacact
caagagaacggctcaccagtaccaggagcagaggaggaagaggaggccgagcagttcagt
gatgaagaagctcctccagccgcagagcctgaacctcctgcagcccacgacccaaccaag
ctagaggaggtgcaggaggagcagcagcaggaggaggaggaacagcaggaggaagaagag
gaggggcagcagcaggaggaagaagagctggaggaggagctggtggtgttggaggaggag
gaacaagaaggaaaggaggtgcaggaggaggaaggaggacacggtaaagaagagaacaag
accgaggagaaggagaacctttctggggagagacagagtggagacggacaggagtccaca
gacgaccctgagtcccggctgccggtgtctccgggtcagaagctcgacgatgacgaggat
cgcaagaacccggcgtacatcccgaggaagggtttgttctttgagcacgacgtcagaggc
cacgcccaggaggaggagaggcctaaaggccagaacaggaggctgtggaaggaggagggt
cgctgggaccacgataagttccgggaggaggagcaggcgcccaagagccgcgaggagctc
atcgccatctacggctacgacatccggaacggaggcggctcctcggagcggccgtaccgc
caacgtcagcccagacagagcacgtctcccagaggagagcagcgctggagggacgggggg
gagaggccggtccggccctggcaaggaggaggaggagctcctccgtcacacagccacccc
tcctctccctcctcctccctcctcctctcctccgctcagcgtaacaacccctccagtctg
ccgcccccccgcagccgcccccccccccacaccctgtcggcccagtacaggaacaacgaa
tccaacgcgcccccgccgcaccccagagaccggcagggccccaaagccgcgcccgagccc
tcgggggaccgcgggggggggcggggcctctctgggggccctcgggatccgggcccgggg
gtcggagcggcgccgccgggcgggtaccggtccgcgtcgccgagacggcagcagcaggac
cgacgggggggcggcgacggacctccgtcgggatcggccgcctgcgaccccgcccgccgc
tcgccggcgaccaatcgggaagcttccccccccgccgagcggccaatggagcgcaagtcc
tacgctctggcccggaggactcgcgccaggcccgcggacctgggcagcaagcaggcgtcg
gtggaggagaccgcctcccccagcgggggggggggcaagagctgggcggaggacggacca
gatcaggagggaggaggaggaggaggaggaggaggaggaggaggaggaggagcgaacctg
gaggagccggaggaggacctggctcggctcagcctgaccgagcagacctggagtccaagt
cctccgtcatacttccgctcggagatgagaggcctccccagttctcctcctcagttcccc
aacatggaggagatggccgtcggctccagtcgagccaaacgctactcgtcccaacgccag
agggcggggcctgagccggctccgccccttcacctcggggtgatggagggacactactac
gagcccatgtcctatcagggaccgatctacgcccacggagatggccccgcccccatcccg
ccgcaaggcatgctggtccagcctgagatgcacctgccccaccccggtctccatccccac
caatcaggcggcccgatccctagccccgccctctacggaggcccccccgtgtctctgccc
cccggccagccgcagcagctgctgccgcctccgttctaccccccgccgggggtcatgacc
ttcccctaccccgccatgtaccccgcgcctcaggctcaggcccaggtgacctacgggggg
gtcacgtactacgacaccatgcagcagcaggcgcagcccaagccctcgcccccccgacgc
acctcgcagcccgtcaccgtcaagccccccccggagctgcacttcgtctcagagtga
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