Pseudoliparis swirei (Mariana hadal snailfish): 130188471
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Entry
130188471 CDS
T09868
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130188471 (cacna1ha)
04020 Calcium signaling pathway
130188471 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130188471 (cacna1ha)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130188471 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
130188471
NCBI-ProteinID:
XP_056262818
LinkDB
All DBs
Position
23:3924768..4021173
Genome browser
AA seq
2352 aa
AA seq
DB search
MTDGEGRVRFQYAECPEGREEVRLAIPTPFGNDPRGHDVDPGGGGGRRRHHEDEEAEEEE
EVEGSGRRRWSPEIREPELEADAGPMAFGVRVRGPVRDPDCVSEEEEEEQPYPALAPGAF
FCLKQTTRPRNWCLRLVCNPWFEHVSMLVILLNCVTLGMFQPCEDVTCELEWCRILQVLD
DCIFVFFAVEMVVKMVALGIFGPNCYLGDKWNQLDFVIVMAGVMEYSLNGHNASLSAIRT
VRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRC
FLGEDIRSMYNVSISPYYMSEEGEDSPFICSAPRENGMLRCHSVPPQAEGGAACSLAAPL
GPASVNGCVNWNQYYNVCRPGDFNPHKGAVNFDNIGYAWIAIFQVITLEGWVDIMYYVMD
AHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENALMREQRARYMSNDSTLAS
YSEPGSCYEEMLRYVSHLYRKLSRRLQRIYSGWHSKRRKKVNPNGGGHGSGRGGGVGSGP
GAAWLRPIHNLLQHHQHQHCRLSNGGQHTISVADGEAGPGGEGLEMKSLPVRGGGGDAQG
GMGALLGRLNGGMNYPTILPSFVCSYSSKTPPPHAKQSGGAEQHPHNHPASEHTETLSKL
HQLMGQHSRQRLLYQLAGVVPSPLLLELLSCPLCARSLETLELGDLERGRGEGDPHDFPQ
GAELRGGRGRSRRRGMAACKSVAVRAWTGFRERLKRIVESKYFNRGIMIAILVNTLSMGI
EYHKQPEELTDVLEISNIVFTSMFVLEMGFMMLAFGLFGYIRNPYNIFDSIIVIISVWEI
IGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSIL
GMHLFGCKFSLQTENGDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAA
LYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSDSDDEKKSENFEEDEKVEQLRDTEL
KMYSLMMTANGHVDPRVAVSMAPPIIMRTAATPMPTPKSSLGPESVLGEELTSREAGPRY
GEAPGLAFFSDAGSIHADSLCGSSASMDPLASDQRSLSLSSPGRRSPLAPRSWGSRRSSW
NSLGRAPSLKRRDTSGERESLLSGEGGEEGGEEDEEQEEEEEEEEGRGDNNRLRPESLEL
LQASTLCPAATTEYGDCNGRTLTFDPHANADPKDDSSPDDDIDEDSSFWIWLKKELLNMK
PRWCKEHEDWTLYSFSPESKLRGWCQSVISHKLFDHVVLVFIFLNCITIALERPNILLNS
KERVFLSVSNYVFTVIFLAEMAMKVVALGFCFGKQTYLQSSWNMLDGLLVLVSLVDILVS
LAYTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFI
VFGILGVQLFKGKFYHCEGLDMKNVTNKSDCLQANYRWIRRKYNFDNLIQALMSLFVLSC
KDGWVNIMYDGLDAVGVDQQAKQRPYYTDYSPLRLSIHTLCTSHYLDLFITFIICINVFT
MSIEHYNQPRYLEEVLKYCNYVFTCIFVVEALLKLAAFGIHRFFKDRWNQLDIGIVALSI
MGIALEELKMSSALPINPTIIRIMRVLRIARVLKLLKMATGMRSLLDTVMQALPQVGNLG
LLFMLLFFIYAALGVELFGKLECTDHNPCEGLSRHATFANFGMAFLTLFRVSTGDNWNGI
MKDTLRECHKEERHCLSYLPLISPMYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKED
AEMDAEIALEMALERERKLSASSKSSSVGGAYVGPCPHSPGQEEEEHCGELLSSRKMSVS
RMHSLPNDSYMFRPVRPASAPYRLEEVELSPQHQHAGSVTSIHSQPCKTRPLLQVPDSSP
VLPRQPPSLPLPRIAPPTPGPSPLSLRRQVAVKVDFVEHQEKPGLPPLSPQTSSPSLLPP
PPPSSPSALPLPPSSPSPFPPPSPSSLHPLLSSPSSLPPPPSSPSLLLPPPPSPHLPASL
RRPRPPSAASLCDPADEEVHHITSAARRRWRNEEDGGPEGRSHSLSPYATPLSLNSSSPP
PPPLPPSSARSALGPLGTDRDAGPVPSGGDRAFQDEPPPPPSAGHPEDQRRHSIEVCLPQ
GDGDRRSAGGPAFPVRVQSVGGGHRKKKMSPPCISIHPPCEREHAPASPQPAACSTLLRR
RTPSYDLSPHAQTATAQAHSPLHAPRPAPSPASTPTRSGTSTPTPPRVPIGPNVFIQPQA
PLAPRPFSLSPAARLPSLSGEYMPLPQFTFDQPQSRYTSGLSDADAAACSSPFDGRLGGG
AGFSAKNRRTAQ
NT seq
7059 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtacgcttccagtacgcagagtgcccggaggggcgggag
gaggtgaggctcgccataccgacgcccttcgggaacgacccgcgaggtcacgatgttgac
cccggggggggaggaggccgccgccgccaccacgaagacgaggaggcggaggaagaggag
gaggtggaggggagcgggaggaggaggtggagtcccgagattcgggaaccagagctggaa
gcggacgccggaccgatggcgttcggggtccgcgtccggggccccgtccgggatccggac
tgcgtctccgaggaggaggaggaggagcagccgtacccggcgctggcccccggggccttc
ttctgcctgaagcagaccaccaggccccgcaactggtgcctccgcctcgtctgtaacccg
tggttcgagcacgtgtccatgctggtcatcctgctgaactgcgtgactctggggatgttc
cagccctgcgaagacgtcacctgcgagttggagtggtgccgcatcctccaggtgttggac
gactgcatcttcgtcttcttcgccgtggagatggtcgtcaagatggtggctctggggatc
ttcgggcccaattgttacctcggcgacaagtggaaccagctggacttcgtcatcgtcatg
gcgggggtgatggagtactctctgaatggccacaacgccagtctgtccgccatccgcacc
gtccgggtgctccggcccctgagggccatcaacagagtaccaagtatgcgcatcctggtg
acgctgctgttggacaccttgcccatgctggggaacgtcctcctcctctgcttcttcgtc
ttcttcatcttcggcatcgtgggagtccagctgtgggcgggactactgcgcaaccgctgc
ttcctgggagaggacatccgatcgatgtacaacgtgtccatcagtccttactacatgtcg
gaggaaggtgaagacagccctttcatctgctcggcgccgcgtgagaacgggatgctgcgc
tgccacagcgtgccgccccaggcggagggcggcgccgcctgctcgctggccgcgccgctc
ggaccggccagcgtcaacggctgcgtcaactggaaccagtactacaacgtgtgtcggccc
ggggacttcaacccgcacaagggcgccgtcaacttcgacaacatcggctacgcctggata
gccatattccaggtcatcacactggaaggatgggtagatatcatgtactatgtcatggac
gctcactccttctacaattttatatattttatactactcattattgtgggctctttcttc
atgatcaacttgtgcctcgtggtcatcgccacccagttctctgagacgaagcagcgtgag
aacgccctgatgcgggagcagcgcgcccgctacatgtccaacgactccacgctggccagc
tacagcgagccgggctcgtgctacgaggagatgctgcgctacgtcagccacctgtaccga
aagctctcccgccggctgcagaggatttactccggctggcacagtaaaaggcgtaaaaag
gtgaaccctaacggcggcggccacggctccggccggggcggcggcgtcggctcgggcccc
ggcgccgcgtggctgaggccgatccacaacctgctgcagcaccatcagcaccagcactgt
cgcctcagcaacggggggcagcacaccatcagcgtggcggacggggaggcggggccaggg
ggggaggggctggagatgaagtcgctccccgtgcgtggcggcggcggcgacgcccagggc
ggcatgggggcgctgctgggccggctgaacggcggcatgaactaccccaccatcctgccc
tccttcgtgtgcagctacagcagcaagacgccgccgccgcacgccaagcagagcgggggg
gcggagcagcacccccacaaccacccggcctcggagcacacggagacactcagcaagctc
caccagctcatgggccagcacagccgccagaggctgctgtaccagctggccggcgtggtg
cccagcccgctgctcctggagctgctgagctgcccgctgtgcgcccgcagcctggagacc
ctggagctgggggacctggagaggggccggggggagggggacccgcacgacttcccccag
ggggcggagctgagaggcgggcgaggtcgcagccgacggcgagggatggcggcgtgcaag
agcgtggcggtgcgggcctggaccggcttcagggagcggctgaagaggatcgtggagagc
aaatacttcaaccgggggatcatgatcgccatcctggtcaacacgctcagcatgggcatc
gagtaccacaagcagcccgaggagttgaccgatgtgttggagatcagcaacatcgtgttc
accagcatgttcgtgctggagatgggcttcatgatgctggctttcggcctgtttggatac
atcaggaacccctacaacatcttcgacagcatcattgtgatcatcagtgtgtgggagatc
atcggtcaggcggacggcgggctgtcggtcctgcggacgttccgcctgctgcgggtcctg
aagctggtccgcttcctgcccgccctgaggaggcagctggtggtgctgatgaagaccatg
gacaacgtggccacgttctgcatgctgctgatgctcttcatcttcaccttcagtattctg
gggatgcatctgttcggctgtaagttcagtctccagacggagaacggagacacgattccc
gaccgcaagaacttcgactctctgctctgggccatcgtcaccgtgttccagatcctcacc
caggaggactggaatgtggtgctgtacaacggcatggcctccacctctccctgggcggcg
ctctactttgttgccctcatgaccttcggcaactacgtgctcttcaatttactcgtggcc
atcttggtcgagggcttccaggctgagggtgatgctaatcggtcggactcagatgacgag
aagaaatccgagaacttcgaggaggacgagaaggtggagcagctccgagacaccgagctg
aagatgtactctctgatgatgacggccaacggtcacgtcgacccgcgcgtcgccgtctcc
atggctcctcccataatcatgcgcacggccgcgacccccatgccgacccccaagagctcc
ctaggcccggagtcggtcctcggggaggagctcacgtcccgggaggcggggcctcggtac
ggcgaggcgccggggctcgccttcttttccgacgccgggagcatccacgcggactctctc
tgcggaagctccgcctccatggaccctttggcctccgaccagcggtctctgagcctctcg
agtcccggccggcgctcccccctcgctcctcgctcgtgggggagccggcgctccagctgg
aacagcctgggccgagcgccgagcctcaagaggcgagacaccagcggggagagggagagc
ctgctgtccggggaggggggggaggagggaggagaggaagacgaagagcaggaggaagag
gaggaggaggaggaaggccggggggacaacaaccgactgcggcccgagtccttggagctg
ctgcaggcgtccacgctctgccccgccgcaaccacggagtacggggactgcaacggccgg
acgctgacctttgacccccacgccaacgccgaccccaaagacgactcctcgccggacgac
gacatcgacgaggacagctctttctggatctggctaaaaaaggagcttctgaacatgaag
ccgcgctggtgcaaagaacacgaagactggacgctgtactcgttctccccggagagcaaa
ctccgtgggtggtgccagagtgtgatctcgcacaaactgttcgaccacgtggttctggtg
ttcatcttcctcaactgcatcaccatcgctctggagagacctaatatactgctcaacagc
aaggagcgagtgttcctgagcgtgtccaactacgtgttcaccgtgatcttcctggccgag
atggccatgaaggtggtggcgctgggcttctgcttcggcaagcagacgtacctgcagtcc
agctggaacatgctggacggcctgctggtcctcgtgtccctggtggacatcctggtctcg
ctggcctacaccggcgggaaccggatcctgggcatcctgcgggtcctccgcctgctgcgg
acgctccgcccactccgggtgatcagccgggctccgggcctgaagctggtggtggagacg
ctcatcacctccctccgacccatcgggaacatcgtcctcatctgctgcgccttcttcatc
gtcttcggcatcttgggggtccagctgttcaaggggaagttctaccactgcgagggtctg
gacatgaagaacgtcaccaacaagtccgactgcctgcaggccaactaccgctggatccgc
aggaagtacaacttcgacaacctgattcaggctctgatgtctctgttcgtgttgtcctgt
aaggacggctgggtcaacatcatgtacgacgggctggacgccgtgggcgtcgaccagcag
gccaagcagaggccgtactacaccgactactccccgctgcgcctgtccatccacacgctg
tgcaccagccactacctggacctcttcatcaccttcatcatctgcatcaacgtcttcacc
atgagcatcgagcactacaaccagccgcggtacctagaggaggttctgaagtactgcaac
tacgtgttcacctgcatcttcgtggtcgaggcgctgctcaagctggcggcgttcggcatc
caccgcttcttcaaagacaggtggaaccagctggacatcggcatcgtggcgctgtccatc
atgggcatcgccctggaggagctgaagatgagctcggcgctgcccatcaaccccaccatc
atccggatcatgagggtgctgcggatagcacgagtgctgaagcttctgaagatggcaact
gggatgcgctctctgctggacaccgtcatgcaggcactgccacaggtgggaaatctgggc
ctcctcttcatgctgctcttcttcatctacgctgcgctgggagtggagctcttcggaaaa
ctggagtgcaccgaccacaacccgtgtgagggcctcagtcgccacgccaccttcgccaac
tttgggatggccttcctcactctgttcagagtgtccacgggagacaactggaacgggatt
atgaaggacacgttgagggagtgtcacaaagaggagcgccactgcctctcctacctgcct
ctgatctccccgatgtacttcgtcaccttcgtgctcatggcccagttcgtgctggtcaac
gtggtcgtggcggttctgatgaagcacctggaggaaagcaacaaggaggccaaagaggac
gcggagatggatgcagagatcgccttggagatggcgttggagagggagcgcaagctgagt
gcatcctccaaaagcagttcagtgggaggagcctacgtcgggccatgtccgcactcacct
gggcaggaggaggaggagcactgcggggagctgctgtcgtcgaggaagatgtccgtctcc
aggatgcactctctgcccaacgacagctacatgttccggcctgtgcggcccgccagcgcc
ccctaccggctggaggaggtggagctcagcccgcagcaccagcatgcaggctcggtgacg
tcgatccactcacagccgtgtaagacccgccccctgctgcaggttccagactcctcccct
gttctcccccggcagcctccctccctccccttgccccgcatcgccccgcccacgcccggc
ccctccccactgtccctgcgcagacaggtggcagtgaaagtggactttgtggagcaccag
gagaaacccggcctgcctcccctctcccctcagacctcctccccatctctccttcctcct
cctcctccctcctctccctcggccctccctctaccaccctcctctccttccccgttccct
cctccctctccctcctctctgcatccgcttctctcctccccctcttccctccctccgccg
ccgtcctccccctcgctgctcctccctccgcctccctcgccccacctccccgccagcctc
cggagaccccgaccgccctcggccgcctccctgtgcgacccggcggacgaggaggtgcat
cacatcaccagcgccgcccgccgcaggtggaggaacgaggaggacgggggtccggagggc
cgcagccactccctctccccctacgccacgccgctttccctcaactcctcctcccctcct
cctcccccgctgccgccttcctccgcgaggagcgcgctcggtccgctcgggacggaccgc
gacgccgggccggttccgagcggcggcgaccgggccttccaagacgagccgccgccgccg
ccgtccgccggccaccccgaggaccagcggcgccactccatcgaggtctgcctcccgcag
ggagacggcgaccggcgctctgcgggcgggccggcgttccccgtgagggtgcagtcggtc
ggcggcggccacaggaagaagaagatgagcccgccgtgcatctccatccacccgccgtgc
gagcgggaacacgcccccgcgtccccgcagccggccgcctgcagcacgctgctgaggcgc
cgcacgccgtcctacgacctcagcccgcacgcgcagactgccacggcgcaggcgcactcc
ccgctgcacgcgcctcgcccggcgccctcgccggcgtccaccccgacgcgctctgggacg
tccacgccgacgcccccgcgcgtccccatcggcccgaacgtcttcatccagccgcaggcg
cctctcgccccgaggcctttctccctctcccccgcggcgaggctcccctcgctctcgggg
gagtacatgcccctcccccagttcaccttcgaccaaccgcagtccagatacacgagcggc
ctgtcggacgccgacgcggccgcctgctcgtctcccttcgacggccggctgggcggcggc
gcgggattcagcgcgaagaaccggaggaccgcccagtga
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