Pseudoliparis swirei (Mariana hadal snailfish): 130188502
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Entry
130188502 CDS
T09868
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030
DNA replication
pswi03410
Base excision repair
pswi03420
Nucleotide excision repair
pswi03430
Mismatch repair
pswi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130188502 (pold1)
03410 Base excision repair
130188502 (pold1)
03420 Nucleotide excision repair
130188502 (pold1)
03430 Mismatch repair
130188502 (pold1)
03440 Homologous recombination
130188502 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130188502 (pold1)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130188502 (pold1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
130188502 (pold1)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
130188502 (pold1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
130188502 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
130188502 (pold1)
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
130188502
NCBI-ProteinID:
XP_056262867
LinkDB
All DBs
Position
23:8088779..8098560
Genome browser
AA seq
1104 aa
AA seq
DB search
MDHKRHNGGPHKPGASQAKRSKTTNEWEDSPSQFEEELSMFEETEMETEEMESQSSHDVI
PVGDLFSTDLNPRWRRPIAPSLNPSSDSLVFQQIDLGHYLGPTVAGMPGQSQGKAPIIRM
FGVTDSGNSVCCHIHGFAPYFYVPAPSGFTSDHLGEFKKELNSVVLKDLRSNKDISVAVL
AVDITRKESMYGYHGKRSLDFLRITMAMPRLIAPAKRLLELGFKFGLFPLNGYQSYEANI
DFEIRFMVDSDVVGCCWIELPKNKYRVREEKSMGETDSRYPGKVSLCQYEVDVGWTDFIS
HPAEGDWQRIAPLRVLSFDIECAGRKGIFPEADKDPVIQIASMVQRQGETEPFIRTVFTL
QACASIVGSQILCFTQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLKRATVVKANF
FSYLGRVRDMKSVVRDQNFQSKQMGRRENKIINMEGRVQFDLLQVLLRDYKLRSYTLNAV
SFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMAR
VTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVMKPEGGEDYTGATVIEPEKGYYSVP
IATLDFSSLYPSIMMAHNLCYTTLLQKGSTERQSLAPEDFIKTPTGDAFVKSSVRKGLLP
EILENLLTARKRAKTELKKETDPFKRQMLDGRQLALKISANSVYGFTGAQVGKLPCLEIS
QSVTGFGRQMIEQTKQLVESKYTVSNGYQADAKVIYGDTDSVMVKFGVATVREAMDIGTQ
AAEWISSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSASADTHEKMECKGIETVRRDNC
PLVANLINTCLQRILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAGK
QAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIFVLENNIPIDTQYY
LEQQLSKPLLRIFEPILGESKAENVLLRGDHTRCKTVLTSKIGGLMAFAQKRSTCIGCKA
VLKTDAAVCNFCKKKESELYQKEIFHLNTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCP
IFYMRKKVQKDLDDQSNLVNRFGW
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggaccataaaagacacaatggtggccctcataagcctggtgcgtcccaggccaaacgg
agtaaaacaactaatgaatgggaagacagtccatcgcagtttgaagaggaattgtccatg
tttgaagaaacagagatggagacagaggagatggagagccagtcaagccatgacgttatt
cccgtaggtgacctcttctcaacagacctaaaccctcgttggcggcggcctattgcccct
tcactgaacccatcatcagattcattggtgtttcagcagattgatcttggccattattta
gggccaacagtggctggcatgccgggtcagtcacagggaaaagccccaatcattcggatg
tttggggtgacagacagtggcaacagtgtgtgttgccacatccacggctttgccccttac
ttctatgttccagcaccaagtggtttcacatctgatcacctgggtgaattcaaaaaagag
ttgaactctgttgtcttgaaggacttgcggtccaataaggacatctctgtcgcagtgttg
gctgtggacatcacccgcaaagagagcatgtatggttaccatgggaaacgcagtctggat
tttttgcggataactatggcgatgcctcgtctcatcgccccagcaaagagactgctggag
ctgggcttcaagttcggactgtttcccctgaatggttaccaatcctatgaggccaacatc
gactttgagataaggtttatggtggacagtgatgtggtgggatgctgctggattgaactt
cctaaaaacaagtacagagtgcgtgaagagaagagcatgggggagacagactctcggtac
cctggcaaggtgtctttgtgtcagtatgaggtggatgtgggatggacagacttcataagc
caccctgctgaaggagactggcagaggatcgctccactccgggtgctcagctttgatatc
gagtgtgcaggaagaaaaggaatcttcccagaagcagacaaagaccctgtgattcagata
gcgtcgatggtgcagcggcagggtgagacggagcccttcattcgcaccgtgttcactctc
caggcctgtgccagcattgtgggctcacagatactgtgcttcacacaggagaaacagcta
ctgcagagctgggcagagttcttgaggactgtggacccagacatcatcactggatacaac
atccaaaactttgacttcccctacttgctcaagagggcaacggttgtaaaggcaaatttc
ttttcctaccttggccgagtgcgagacatgaagtcagtcgtgcgagaccaaaacttccag
agcaagcagatgggccgcagagagaacaagatcattaacatggagggccgggttcagttt
gatctgctgcaggttctcctcagggactataaactgcgctcgtacacactgaacgccgtc
agtttccacttcctgcaagaacagaaagaggatgtgcagcactccatcatcactgatctg
cagaatggaaacgaacagacgcgtcggcggttggccgtctactgcctcaaagacgcctac
ctcccgctgcgcttgctgcagaagctgatgtgcgtgattaactacatggagatggcccga
gtgaccggtgtgcctctcacctacctgctctcgagaggacagcagatcaaagtcgtctct
cagctcctgcgacaggccatgaaacaggacctggtcatgcctgttatgaagccagaagga
ggagaagactacactggagcgactgtcattgagccagagaaagggtattacagcgtacct
attgccaccttggatttctcctccttgtatccgtccatcatgatggctcacaatctgtgc
tacaccaccttactgcagaagggctcaaccgagaggcagagcctcgcaccagaggacttc
atcaagactcccactggcgacgcgtttgtgaagagctctgtaaggaaaggacttctacct
gagatcctggagaacctgctgaccgccagaaagagggccaaaaccgagctaaagaaggag
accgacccttttaagaggcagatgctggacggccgacagctggccctcaaaatcagcgcg
aactccgtctacggcttcactggtgctcaggtgggcaagctgccctgcttagagatctca
cagagcgtcacaggttttggaagacagatgattgagcaaaccaaacaactggtggagtcc
aagtacaccgtttccaatggttaccaagctgatgccaaggttatttatggggacacagat
tccgtcatggttaagttcggagttgccacagtgagggaggcaatggatatcggcacgcag
gcagcagagtggatttcgtcccatttcacaccgcccatcaagctggagtttgagaaggtg
tactacccgtacctgctgatcaacaagaagcgttacgcgggtctctacttctccgccagt
gccgacacgcatgagaagatggaatgtaaaggcatcgaaactgtccggagagacaattgc
cctctggtggctaaccttatcaacacctgtctgcagagaatcctcatagacagggatccc
cagggtgctgtggctcacgctaaagaagtgatctccgacctgctgtgcaaccgcatcgac
atcagtcagctggtcatcaccaaggagctaacgcgcactgcccaggagtacgctggcaaa
caggcccacgtggagctggcggagaggatgagaaaaagagatgctggcagcgccccaaac
ctgggagaccgagtcccatacgtcatcattaaggctgccaagggagtagcggcatacatg
aagtcggaggacccgatctttgtgctggagaacaacattcccatcgacacacaatactac
ctggagcagcagctgtccaagcccctgctgagaatatttgagcccatcctgggagagagc
aaggcagaaaacgtcctgctcaggggcgaccacacgcgctgtaagactgtgttgacctcg
aagatcgggggcctcatggccttcgctcaaaagaggagcacctgcatcggctgcaaagcc
gtgctcaagacggatgcggcagtgtgcaatttctgtaagaagaaggagtctgaactgtac
cagaaggagatctttcacctgaacaccctggaggagcgtttctctcgcttgtggactcaa
tgtcagcgctgccagggctccctccacgaggatgtgctctgcaccagtcgggattgtcca
atcttttacatgaggaagaaggttcagaaagatttggacgaccagagcaatctggtgaat
cgtttcggctggtga
DBGET
integrated database retrieval system
